Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM47_RS03090 Genome accession   NZ_CP046524
Coordinates   589316..591274 (+) Length   652 a.a.
NCBI ID   WP_235081028.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 584316..596274
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS03065 (GOM47_03055) - 584449..584961 (+) 513 WP_235081023.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  GOM47_RS03070 (GOM47_03060) - 584945..585595 (+) 651 WP_235081024.1 DUF1803 domain-containing protein -
  GOM47_RS03075 (GOM47_03065) - 585697..585897 (+) 201 WP_235081025.1 CsbD family protein -
  GOM47_RS03080 (GOM47_03070) - 585934..587379 (-) 1446 WP_235081026.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  GOM47_RS03085 (GOM47_03075) - 587485..589107 (+) 1623 WP_235081027.1 polysaccharide biosynthesis protein -
  GOM47_RS03090 (GOM47_03080) amiA 589316..591274 (+) 1959 WP_235081028.1 peptide ABC transporter substrate-binding protein Regulator
  GOM47_RS03095 (GOM47_03085) - 591420..592514 (+) 1095 WP_235081029.1 cystathionine gamma-synthase -
  GOM47_RS03100 (GOM47_03090) - 592522..593688 (+) 1167 WP_235081030.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72861.06 Da        Isoelectric Point: 4.7373

>NTDB_id=404985 GOM47_RS03090 WP_235081028.1 589316..591274(+) (amiA) [Streptococcus oralis strain SOT]
MKKSKAKYLTLASVVLSAGILLSACGNSSSSSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSKDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQESVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQTATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKDVQFPIHLDVSVDQSSKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWGPDYLDPSTYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEVQAWLVDSALAIPNVSLGGTPGLRKTVPFSAPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=404985 GOM47_RS03090 WP_235081028.1 589316..591274(+) (amiA) [Streptococcus oralis strain SOT]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
CTCAAGTAGTTCTTCTAAAACATATAACTATGTTTATTCGAGTGATCCATCTAGTTTGAACTATCTAGCAGAGAACCGTG
CAACAACCAATGATATCGTTACCAATCTGGTAGATGGTTTGATGGAAAATGACCAATATGGGAACTATGTTCCATCTTTG
GCAGAGGATTGGACCGTTTCCAAGGACGGTTTGACTTATACCTACAAACTTCGTAAAGATGCCAAGTGGTATACATACGA
AGGTGAAGAATACGCACCTGTAACTGCTCAAGACTTTGTGACAGGTTTGAAATATGCGGCAGATAAAAAATCTGAAGCCT
TGTACTTGGTTCAAGAATCTGTAGCAGGTTTGGATGACTATATCAACGGTAAAACAACAGACTTTTCAACTGTCGGTGTG
AAGGCGATTGATGACCAAACAGTTCAGTACACTTTGACACGACCAGAGCCTTACTGGAATTCAAAAACAACATCCACCAT
TCTCTTCCCTGTCAATGCCGACTTCTTGAAATCAAAAGGGGATGATTTTGGTAAGGTAGATCCTTCTAGCATTTTGTACA
ATGGACCTTTCTTGATGAAATCTTTTGTTTCAAAATCTGTTATTGAATACAAGAAAAATCCAAATTACTGGGATGCTAAA
AATGTCTTTGTGGACGATGTGAAATTGACTTACTATGATGGTAGTGACCAAGATGCCCTAGCTCGTAACTTTGTAGAAGG
AGTCTACAGCTACGCTCGTCTCTATCCAAATAGCTCAAGCTTTGAAGGAATTAAAGAGAAGAACAAGGATAATATCATCT
ATAGTATGCAAACCGCAACTTCTTATTACTTGAACTTCAATTTGGACAGAAAATCTTATAACTTCACGTCTAAATCCTCA
GATATCGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGCCAAGCCTTCAACTATGCTTACAACCGTAC
AGCCTATGGAGCTCAATCTCAAGGGGAAGACGGAGCAACGAAGATTATTCGTAACTTGGTTGTACCTCCAACATTTGTAA
GTATCAACGGAAAAGACTTTGGTGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCGCAAGATCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGATGTGCAATTCCCAATCCACTTGGATGTATCTGTAGACCAATCATCTAAAAAAGGTGTACTTGAAGCGAGCTCTTTGA
AACAATCCATCGAATCTGTTCTGGGAGCTGAGAATGTGGTTATCGATATCCAACAATTATCAACAGATGACTTCGATAAT
TCTAGCTACCTCGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGTGGTTGGGGTCCAGACTATCTAGACCC
ATCAACCTACCTCGATATCTTAAATGTCAATAACGGTGGTATGTTGCAAAACCTCGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTGGAAGAAGCGAACAAGGAGCAAGATCCAGCGAAACGT
TATGAAAAATATGCTGAAGTTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTCTCCCTTGGTGGAACACC
TGGCTTGAGAAAGACAGTTCCATTCTCAGCGCCATTCTCACAAGCAGGAAATAAGGGTGTCGAATCATACAAGTATCTCA
AGTTACAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCAAAT
AAAAAGGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.991

100

0.575
  amiA3 Streptococcus thermophilus LMG 18311

56.601

100

0.572
  amiA3 Streptococcus thermophilus LMD-9

56.297

100

0.569

Multiple sequence alignment