Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL/pilP   Type   Machinery gene
Locus tag   HWQ50_RS30015 Genome accession   NZ_CP058331
Coordinates   6462128..6462652 (-) Length   174 a.a.
NCBI ID   WP_003116136.1    Uniprot ID   A0A0H2ZIN8
Organism   Pseudomonas aeruginosa strain ACR22     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 6457128..6467652
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ50_RS30000 (HWQ50_29815) aroB 6458256..6459362 (-) 1107 WP_003116138.1 3-dehydroquinate synthase -
  HWQ50_RS30005 (HWQ50_29820) aroK 6459412..6459930 (-) 519 WP_003095833.1 shikimate kinase AroK -
  HWQ50_RS30010 (HWQ50_29825) pilQ 6459942..6462074 (-) 2133 WP_023110483.1 type 4a pilus secretin PilQ Machinery gene
  HWQ50_RS30015 (HWQ50_29830) comL/pilP 6462128..6462652 (-) 525 WP_003116136.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  HWQ50_RS30020 (HWQ50_29835) pilO 6462649..6463272 (-) 624 WP_023110484.1 type 4a pilus biogenesis protein PilO Machinery gene
  HWQ50_RS30025 (HWQ50_29840) pilN 6463269..6463865 (-) 597 WP_003141783.1 type 4a pilus biogenesis protein PilN -
  HWQ50_RS30030 (HWQ50_29845) pilM 6463865..6464929 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  HWQ50_RS30035 (HWQ50_29850) - 6465114..6467585 (+) 2472 WP_179118826.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19224.07 Da        Isoelectric Point: 9.7252

>NTDB_id=404982 HWQ50_RS30015 WP_003116136.1 6462128..6462652(-) (comL/pilP) [Pseudomonas aeruginosa strain ACR22]
MRARLILSSLLLTMLAGCGANSEFGDLQAYMNEVRARPKGNIEPLPKFQPYEAFTYSASNLRSPFQPPVKIDLTVRQKGN
KVVKPDETRVKQFLEGFNIETFEMVGTLSNAQGTFALVKGAGGVHRVRVGDYLGRNDGKVVGISEGKIDVIEIVPDGEGN
WLERPRSLTLKERS

Nucleotide


Download         Length: 525 bp        

>NTDB_id=404982 HWQ50_RS30015 WP_003116136.1 6462128..6462652(-) (comL/pilP) [Pseudomonas aeruginosa strain ACR22]
ATGAGAGCCCGCCTGATTCTGAGCAGCTTGCTGCTCACCATGCTTGCCGGTTGCGGCGCGAATTCCGAGTTCGGCGATCT
TCAAGCCTATATGAACGAGGTACGTGCTCGACCTAAGGGCAATATCGAGCCTCTGCCGAAGTTTCAGCCATATGAAGCTT
TTACTTATAGCGCTTCGAACCTGCGTAGTCCGTTCCAGCCGCCGGTGAAGATCGACCTGACCGTGCGGCAGAAAGGCAAT
AAGGTGGTTAAACCCGACGAGACACGGGTCAAGCAGTTCCTGGAAGGTTTCAACATCGAAACCTTCGAGATGGTCGGCAC
ACTGTCCAACGCCCAGGGTACCTTCGCCTTGGTGAAGGGCGCGGGTGGCGTGCATCGGGTGAGGGTCGGGGACTACCTGG
GGCGCAACGATGGCAAGGTCGTCGGCATCAGCGAAGGAAAAATAGACGTGATTGAAATCGTTCCTGACGGAGAGGGGAAC
TGGCTGGAGCGTCCGCGCAGCCTGACTCTCAAGGAACGCTCCTGA

Domains

Predicted by InterProScan.

Pilus assembly protein, PilP (PilP)

(26-170)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZIN8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL/pilP Acinetobacter baylyi ADP1

36.628

98.851

0.362