Detailed information    

insolico Bioinformatically predicted

Overview

Name   clpX   Type   Regulator
Locus tag   GOM47_RS02865 Genome accession   NZ_CP046524
Coordinates   545265..546497 (+) Length   410 a.a.
NCBI ID   WP_235080997.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOT     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 540265..551497
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM47_RS02830 (GOM47_02820) galE 540958..541977 (+) 1020 WP_001156556.1 UDP-glucose 4-epimerase GalE -
  GOM47_RS02835 (GOM47_02825) - 541979..542944 (+) 966 WP_049479532.1 glycosyltransferase family 2 protein -
  GOM47_RS02840 (GOM47_02830) - 543002..543199 (-) 198 WP_004235080.1 ferredoxin -
  GOM47_RS02845 (GOM47_02835) - 543245..543754 (+) 510 WP_049479530.1 SAG1386/EF1546 family surface-associated protein -
  GOM47_RS02850 (GOM47_02840) cmk 543764..544438 (+) 675 WP_070657425.1 (d)CMP kinase -
  GOM47_RS02855 (GOM47_02845) - 544557..545063 (+) 507 WP_235080996.1 dihydrofolate reductase -
  GOM47_RS02860 (GOM47_02850) - 545063..545233 (+) 171 WP_000442255.1 hypothetical protein -
  GOM47_RS02865 (GOM47_02855) clpX 545265..546497 (+) 1233 WP_235080997.1 ATP-dependent Clp protease ATP-binding subunit ClpX Regulator
  GOM47_RS02870 (GOM47_02860) yihA 546506..547093 (+) 588 WP_000405203.1 ribosome biogenesis GTP-binding protein YihA/YsxC -
  GOM47_RS02875 (GOM47_02865) - 547103..547483 (+) 381 WP_001140420.1 RidA family protein -
  GOM47_RS02880 (GOM47_02870) rapZ 547535..548425 (+) 891 WP_000163046.1 RNase adapter RapZ -
  GOM47_RS02885 (GOM47_02875) - 548422..549399 (+) 978 WP_200371063.1 YvcK family protein -
  GOM47_RS02890 (GOM47_02880) whiA 549396..550307 (+) 912 WP_235080998.1 DNA-binding protein WhiA -
  GOM47_RS02895 (GOM47_02885) - 550340..551308 (-) 969 WP_235080999.1 NAD(P)/FAD-dependent oxidoreductase -

Sequence

Protein


Download         Length: 410 a.a.        Molecular weight: 45742.37 Da        Isoelectric Point: 4.4902

>NTDB_id=404983 GOM47_RS02865 WP_235080997.1 545265..546497(+) (clpX) [Streptococcus oralis strain SOT]
MPTNRKNDMMVYCSFCGKSQEEVKKIIAGNNAFICNECVELAQEIIREELAEEVLADLSEVPKPIELLNILNHYVIGQDR
AKRALAVAVYNHYKRINFHDTREETEDVDLQKSNILMIGPTGSGKTFLAQTLARSLNVPFAIADATALTEAGYVGEDVEN
ILLKLLQAADFNIERAERGIIYVDEIDKIAKKSENVSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEMIQVDT
KNILFIVGGAFDGIEEIVKQRLGEKVIGFGQNNKAIDEKSSYMQEIIAEDIQKFGIIPELIGRLPVFAALEQLTVDDLVR
ILKEPRNALVKQYQTLLSYDDVELEFDDEALQEIANKAIERKTGARGLRSIIEETMLDVMFEVPSQENVKLVRITKEAVD
GTEKPILETA

Nucleotide


Download         Length: 1233 bp        

>NTDB_id=404983 GOM47_RS02865 WP_235080997.1 545265..546497(+) (clpX) [Streptococcus oralis strain SOT]
ATGCCTACAAATAGGAAAAATGATATGATGGTTTATTGCTCATTTTGTGGCAAAAGCCAAGAAGAAGTTAAAAAAATAAT
CGCTGGGAACAATGCCTTTATCTGTAATGAATGTGTGGAGTTGGCCCAGGAAATTATTCGTGAGGAGTTGGCTGAGGAAG
TTTTGGCGGACTTGTCTGAGGTACCAAAACCAATCGAACTCCTAAATATTTTGAACCACTATGTGATCGGTCAAGATCGT
GCCAAACGTGCTTTGGCAGTGGCTGTATATAACCACTACAAACGCATCAATTTCCATGACACTCGTGAAGAGACTGAAGA
TGTTGATTTGCAAAAGTCAAACATTCTAATGATTGGCCCAACTGGATCAGGGAAGACTTTCCTTGCTCAAACTCTTGCTA
GAAGTTTGAATGTACCATTTGCTATTGCTGATGCAACGGCATTGACGGAAGCTGGTTATGTTGGTGAGGACGTTGAAAAT
ATCCTCCTCAAACTCTTGCAGGCAGCTGACTTTAACATTGAACGTGCAGAACGTGGGATTATCTACGTCGATGAGATTGA
TAAGATTGCTAAGAAGAGCGAGAATGTTTCTATTACACGTGATGTTTCTGGTGAAGGTGTGCAACAAGCCCTCCTCAAGA
TTATCGAAGGTACAGTAGCAAGTGTTCCTCCACAAGGTGGACGCAAACATCCACAACAAGAGATGATTCAGGTGGATACT
AAAAACATCCTCTTCATCGTGGGTGGTGCTTTTGATGGCATCGAAGAAATTGTCAAACAGCGTCTTGGTGAAAAAGTTAT
CGGTTTCGGACAAAACAACAAGGCAATTGACGAAAAGAGCTCATACATGCAAGAAATCATTGCAGAAGATATTCAGAAAT
TCGGTATTATTCCTGAATTAATTGGACGCTTGCCTGTCTTTGCAGCCTTGGAGCAGTTGACAGTGGATGACTTGGTTCGC
ATTTTGAAAGAGCCAAGAAATGCCTTGGTCAAACAATACCAGACCTTGCTTTCTTATGATGATGTTGAGTTGGAATTTGA
CGACGAAGCTCTTCAGGAAATCGCCAATAAGGCTATTGAACGCAAAACTGGTGCGCGTGGTCTTCGCTCAATCATCGAAG
AAACCATGCTAGACGTTATGTTTGAAGTGCCAAGTCAAGAAAATGTGAAATTGGTCCGCATCACAAAAGAAGCTGTTGAT
GGAACGGAAAAACCCATTCTAGAAACAGCCTAG

Domains

Predicted by InterproScan.

AAA domain (Cdc48 subfamily) (AAA_2)

(111-306)

C-terminal, D2-small domain, of ClpB protein (ClpB_D2-small)

(313-390)

ClpX C4-type zinc finger (zf-C4_ClpX)

(12-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  clpX Streptococcus mutans UA159

86.829

100

0.868
  clpX Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

56.965

98.049

0.559

Multiple sequence alignment