Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM48_RS08470 Genome accession   NZ_CP046523
Coordinates   1683305..1685266 (-) Length   653 a.a.
NCBI ID   WP_235097129.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1678305..1690266
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS08445 (GOM48_08385) - 1678488..1678823 (-) 336 WP_235097124.1 hypothetical protein -
  GOM48_RS08450 (GOM48_08390) - 1679017..1679871 (-) 855 WP_235097125.1 SDR family NAD(P)-dependent oxidoreductase -
  GOM48_RS08455 (GOM48_08395) rnmV 1679883..1680446 (-) 564 WP_235097126.1 ribonuclease M5 -
  GOM48_RS08460 (GOM48_08400) - 1680446..1681219 (-) 774 WP_235097127.1 TatD family hydrolase -
  GOM48_RS08465 (GOM48_08405) - 1681369..1683213 (+) 1845 WP_235097128.1 APC family permease -
  GOM48_RS08470 (GOM48_08410) amiA 1683305..1685266 (-) 1962 WP_235097129.1 peptide ABC transporter substrate-binding protein Regulator
  GOM48_RS08475 (GOM48_08415) rpmH 1685409..1685543 (-) 135 WP_000831905.1 50S ribosomal protein L34 -
  GOM48_RS08480 (GOM48_08420) - 1685688..1686902 (-) 1215 WP_235097130.1 pyridoxal phosphate-dependent aminotransferase -
  GOM48_RS08485 (GOM48_08425) - 1687047..1687346 (-) 300 WP_235097131.1 hypothetical protein -
  GOM48_RS08490 (GOM48_08430) - 1687513..1687965 (+) 453 WP_000079159.1 universal stress protein -
  GOM48_RS08495 (GOM48_08435) - 1688001..1689386 (-) 1386 WP_235097132.1 Cof-type HAD-IIB family hydrolase -

Sequence

Protein


Download         Length: 653 a.a.        Molecular weight: 72886.85 Da        Isoelectric Point: 4.6808

>NTDB_id=404941 GOM48_RS08470 WP_235097129.1 1683305..1685266(-) (amiA) [Streptococcus oralis strain SOD]
MKKSKALLLGAGILSASFLMVACSSAQSNTDKTYSYVFASNPDTLDYITSTRGSTSSITTNLIDGLLENDKYGNLVPSMA
ESWTVSKDGLTYTYKIRQGAKWYTSEGEEYAEVTAHDFVTGLKYAADKKAENLYLVQDSIKGLADYVEGKTSDFETVGVK
AVDDYTLQYTLNKPESYWNSKTTGGILSPVNEAFLKSKGDDFGSVTPSSILSNGPYLFKSFTSKSLIEFEKNPNYWDKDN
VKIEKVKLSFYDGSDQDSLARGFLEGNYTDGRIFPTSSVFDQLKKGNEDKITYTPQDAVTFYYLFNVNRQSYNQTMKQTD
KEKTDSRAAMQNKDFRQAINFAFDRHAYAAQTNGEDGADRILRNTVTPSNFVQIGRKNFGDAVNEKIVNYGTEWANVNLN
DAQPAFLNADKAKAEFAKAKESLQAEGVTFPIHLDMPVDQTAKLDVQQASSFKQTVEETLGSDNIVIDVIQLSPDEKDNA
TFFADTAEQKDYDIDISGWSGDYSDPKTYLDLLDPDSGSQLKNLGLTPGKDNGVKEKIGLSTYKKLLDAADKEVENTQVR
YEKFAEVQAWLTDSALFMPVQSGGANPIFRKTVPFTGAFSFVGHKGDADNYKYLELQKDPVTAKQYQELYEKWQKEKTES
NKKAQEDLANHIQ

Nucleotide


Download         Length: 1962 bp        

>NTDB_id=404941 GOM48_RS08470 WP_235097129.1 1683305..1685266(-) (amiA) [Streptococcus oralis strain SOD]
ATGAAGAAATCAAAAGCCCTCCTACTAGGGGCTGGAATTTTGAGTGCAAGCTTCTTGATGGTGGCTTGTAGTTCGGCGCA
ATCAAATACAGATAAAACCTACTCGTATGTATTTGCCAGCAATCCAGATACATTAGACTATATCACTTCGACACGTGGCT
CGACTTCTAGCATTACGACAAACTTGATTGATGGTTTGTTGGAAAATGATAAGTACGGTAACCTCGTTCCTTCTATGGCA
GAGTCATGGACAGTATCAAAAGACGGTTTAACCTATACCTATAAAATCCGCCAAGGGGCTAAGTGGTATACCTCTGAAGG
AGAAGAGTATGCTGAAGTGACAGCACATGACTTTGTGACGGGTCTTAAGTATGCAGCGGATAAAAAGGCTGAGAACTTGT
ACTTGGTACAAGACTCCATCAAAGGTTTGGCAGATTATGTCGAAGGGAAAACATCTGACTTTGAGACGGTTGGAGTCAAG
GCAGTGGACGACTATACTCTCCAATACACTTTGAACAAACCGGAGTCTTATTGGAATTCAAAGACAACAGGGGGAATTTT
GAGTCCTGTCAATGAAGCCTTTTTGAAATCTAAGGGAGATGATTTTGGAAGTGTTACCCCATCTAGTATCCTGTCAAATG
GGCCATACTTGTTCAAGTCTTTCACATCAAAATCTTTAATTGAGTTTGAAAAGAACCCTAATTACTGGGATAAGGACAAC
GTCAAGATTGAGAAGGTAAAACTTTCCTTCTATGATGGTTCAGACCAAGATAGTTTGGCTCGAGGATTCTTAGAAGGCAA
CTACACAGATGGCCGTATCTTCCCGACAAGCTCTGTCTTTGACCAGTTGAAAAAAGGGAATGAAGATAAGATTACCTATA
CTCCTCAGGATGCTGTGACTTTCTACTATCTCTTCAATGTCAACCGTCAAAGTTACAATCAAACAATGAAACAGACGGAT
AAAGAAAAGACGGATTCTCGTGCAGCTATGCAAAATAAGGACTTCCGTCAGGCGATTAACTTTGCCTTTGACCGTCATGC
CTATGCCGCACAGACAAATGGAGAAGATGGAGCTGACCGTATCCTTCGAAACACTGTCACACCAAGCAACTTTGTTCAAA
TCGGTAGGAAAAACTTTGGAGATGCTGTCAATGAAAAGATAGTCAACTATGGTACAGAGTGGGCTAATGTCAATCTAAAC
GACGCTCAGCCTGCCTTCTTGAATGCTGATAAAGCCAAGGCAGAATTTGCCAAAGCCAAAGAAAGCTTACAGGCAGAAGG
TGTGACCTTCCCTATCCATTTAGACATGCCGGTGGATCAGACTGCTAAGTTGGACGTACAGCAAGCCAGTTCTTTCAAGC
AGACGGTTGAGGAGACACTTGGATCAGATAATATTGTTATCGATGTGATTCAACTTTCTCCAGACGAGAAAGACAATGCA
ACCTTCTTTGCTGACACAGCTGAACAAAAGGACTATGACATTGACATCTCAGGCTGGAGCGGAGATTACTCTGATCCCAA
GACCTATCTTGACCTCTTGGATCCAGACTCTGGTTCTCAGTTAAAAAATCTTGGCTTGACTCCAGGAAAAGACAATGGTG
TTAAGGAAAAAATCGGTCTCTCTACCTACAAGAAGTTGTTGGATGCGGCAGATAAAGAAGTTGAAAACACTCAGGTTCGC
TATGAGAAATTTGCCGAAGTTCAAGCTTGGCTAACAGATAGTGCTCTCTTTATGCCAGTTCAAAGCGGAGGAGCTAATCC
AATCTTCCGTAAGACTGTACCGTTCACAGGAGCCTTCTCATTTGTCGGACACAAAGGGGATGCGGACAACTACAAATACC
TTGAGTTGCAAAAAGATCCCGTGACTGCGAAACAGTACCAAGAACTTTATGAAAAATGGCAAAAAGAAAAAACTGAGTCC
AATAAAAAAGCTCAAGAAGATTTAGCTAACCACATTCAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(75-516)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

55.86

100

0.562
  amiA3 Streptococcus thermophilus LMD-9

55.556

100

0.559
  amiA3 Streptococcus thermophilus LMG 18311

55.251

100

0.556

Multiple sequence alignment