Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   GOM48_RS07050 Genome accession   NZ_CP046523
Coordinates   1397185..1399143 (-) Length   652 a.a.
NCBI ID   WP_143989834.1    Uniprot ID   A0A4V0EQB7
Organism   Streptococcus oralis strain SOD     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1392185..1404143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS07040 (GOM48_07035) - 1394771..1395937 (-) 1167 WP_235096677.1 MalY/PatB family protein -
  GOM48_RS07045 (GOM48_07040) - 1395945..1397039 (-) 1095 WP_235096681.1 cystathionine gamma-synthase -
  GOM48_RS07050 (GOM48_07045) amiA 1397185..1399143 (-) 1959 WP_143989834.1 peptide ABC transporter substrate-binding protein Regulator
  GOM48_RS09815 - 1399602..1400504 (-) 903 WP_321159618.1 LPXTG cell wall anchor domain-containing protein -
  GOM48_RS09820 - 1400521..1402146 (+) 1626 WP_321159598.1 hypothetical protein -
  GOM48_RS09825 - 1402190..1402330 (+) 141 WP_321159599.1 hypothetical protein -
  GOM48_RS09830 - 1403960..1404100 (+) 141 WP_321159600.1 hypothetical protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72736.97 Da        Isoelectric Point: 4.8039

>NTDB_id=404929 GOM48_RS07050 WP_143989834.1 1397185..1399143(-) (amiA) [Streptococcus oralis strain SOD]
MKKSKAKYLTLAGVVLSAGILLSACGNSASSSKTYNYVYSSDPSSLNYLAENRATTNDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSKDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPESYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYNGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFVEGVYSYARLYPNSSSFEGIKEKNKDNIIYSMQTATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVSVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGMLQNLGLEPGEVNDKAKAVGLDTYTQMLEEANKEQDPAKR
YEKYAEIQAWLVDSALAIPNVSLGGTPSLRKTVPFSAPFSQAGNKGVESYKYLKLQDKTVTTAEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=404929 GOM48_RS07050 WP_143989834.1 1397185..1399143(-) (amiA) [Streptococcus oralis strain SOD]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTGGCAGGTGTCGTGTTAAGCGCAGGTATCCTATTGAGCGCATGTGGGAA
CTCAGCAAGTTCATCTAAAACATATAACTATGTCTATTCTAGTGATCCATCTAGTTTGAACTATCTAGCAGAGAACCGTG
CAACAACCAATGATATCGTTACTAATTTGGTAGATGGTTTGATGGAAAATGACCAATATGGTAACTATGTTCCATCTTTA
GCGGAGGACTGGACCGTTTCCAAGGACGGTTTGACTTATACCTACAAACTTCGTAAAGATGCCAAGTGGTATACATACGA
AGGTGAAGAATACGCACCTGTAACTGCTCAAGACTTTGTGACAGGTTTGAAATATGCGGCAGATAAAAAATCTGAAGCCT
TGTACTTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGTAAAACAACAGACTTTTCAACTGTCGGTGTG
AAGGCGATTGATGACCAAACAGTTCAGTACACTTTGACACGTCCAGAATCTTATTGGAACTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCGGATTTCTTGAAATCAAAAGGGGATGATTTTGGTAAAGTAGACCCTTCTAGCATTTTGTACA
ATGGACCTTTCTTGATGAAATCATTTGTTTCAAAATCTGTTATCGAATACAAGAAAAATCCGAACTACTGGGATGCTAAA
AATGTCTTTGTGGACGATGTGAAATTGACTTACTATGATGGTAGTGACCAAGATGCCCTAGCTCGTAACTTTGTAGAAGG
AGTCTACAGCTACGCGCGTCTCTATCCAAATAGCTCAAGCTTTGAAGGAATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAACCGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACTTCTAAGTCCTCA
GATATCGAAAAGAAATCAACACAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCTCAATCTCAAGGGGAAGATGGAGCAACGAAGATTATTCGTAACCTAGTGGTACCTCCTACATTTGTAA
GTATCAACGGAAAAGACTTTGGCGATGTTGTTTCAGAAAAGATGGTCAACTATGGTCAAGAATGGCAAGGAATCAACTTT
GCAGACGCGCAAGATCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATTCACTTGGATGTATCAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGTTCTTTAA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATTGATATCCAACAATTATCAACAGATGACTTCGATAAT
TCTAGCTACCTCGCTCAAACGGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCTGACTACTTGGATCC
ATCAAGCTATCTAGATATCCTAAATGTCAATAACGGCGGTATGTTGCAAAACCTTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCTAACAAGGAGCAAGATCCAGCGAAACGT
TATGAAAAATATGCAGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCCCTTGGTGGAACACC
TAGCTTGAGAAAGACAGTTCCATTCTCAGCACCATTCTCACAAGCTGGAAATAAGGGTGTAGAATCATACAAGTATCTCA
AGTTGCAAGATAAGACGGTGACAACTGCTGAGTACGAAAAAGCTAAAGAAAAATGGCTGAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAATTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-519)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A4V0EQB7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.535

100

0.571
  amiA3 Streptococcus thermophilus LMG 18311

56.449

100

0.571
  amiA3 Streptococcus thermophilus LMD-9

56.146

100

0.567

Multiple sequence alignment