Detailed information    

insolico Bioinformatically predicted

Overview

Name   comEA/comE1   Type   Machinery gene
Locus tag   HWQ50_RS11820 Genome accession   NZ_CP058331
Coordinates   2540947..2541276 (+) Length   109 a.a.
NCBI ID   WP_023109812.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain ACR22     
Function   dsDNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2535947..2546276
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWQ50_RS11805 (HWQ50_11760) - 2536676..2537620 (+) 945 WP_015502635.1 NAD-dependent epimerase/dehydratase family protein -
  HWQ50_RS11810 (HWQ50_11765) - 2537721..2538746 (+) 1026 WP_023093916.1 MraY family glycosyltransferase -
  HWQ50_RS11815 (HWQ50_11770) - 2538759..2540756 (+) 1998 WP_021265047.1 polysaccharide biosynthesis protein -
  HWQ50_RS11820 (HWQ50_11775) comEA/comE1 2540947..2541276 (+) 330 WP_023109812.1 ComEA family DNA-binding protein Machinery gene
  HWQ50_RS11830 (HWQ50_11785) - 2541493..2542689 (-) 1197 WP_003104588.1 amino acid aminotransferase -
  HWQ50_RS11835 (HWQ50_11790) uvrB 2542877..2544889 (+) 2013 WP_017149200.1 excinuclease ABC subunit UvrB Machinery gene

Sequence

Protein


Download         Length: 109 a.a.        Molecular weight: 11367.31 Da        Isoelectric Point: 8.0459

>NTDB_id=404929 HWQ50_RS11820 WP_023109812.1 2540947..2541276(+) (comEA/comE1) [Pseudomonas aeruginosa strain ACR22]
MHLIKSALLLILFACLPFSASAAPVAVAKNPLASTTPATTVSPGEQVNINTVDEAALIRGLNGVGEAKARAILEYRAAHG
PFVSVDQLLEVKGVGPALLEKNRARIVIE

Nucleotide


Download         Length: 330 bp        

>NTDB_id=404929 HWQ50_RS11820 WP_023109812.1 2540947..2541276(+) (comEA/comE1) [Pseudomonas aeruginosa strain ACR22]
ATGCACCTAATCAAATCCGCTCTGCTTCTCATCCTGTTCGCCTGTCTTCCGTTTTCGGCTTCCGCCGCACCGGTCGCCGT
CGCCAAGAATCCGCTGGCCTCAACGACACCTGCGACGACCGTGTCGCCGGGGGAGCAGGTCAATATCAATACGGTCGACG
AGGCCGCCCTGATACGGGGGCTCAACGGTGTCGGCGAGGCCAAGGCCAGGGCGATCCTCGAGTATCGTGCGGCCCATGGT
CCGTTCGTCTCGGTGGATCAACTGCTGGAAGTGAAAGGGGTAGGCCCGGCGTTGCTGGAGAAGAACCGGGCGCGGATCGT
CATCGAGTGA

Domains

Predicted by InterProScan.

Helix-hairpin-helix motif (HHH_3)

(44-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comEA/comE1 Glaesserella parasuis strain SC1401

40.385

95.413

0.385

Multiple sequence alignment