Detailed information    

insolico Bioinformatically predicted

Overview

Name   vicX   Type   Regulator
Locus tag   GOM48_RS05405 Genome accession   NZ_CP046523
Coordinates   1069428..1070237 (-) Length   269 a.a.
NCBI ID   WP_235096358.1    Uniprot ID   -
Organism   Streptococcus oralis strain SOD     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 1064428..1075237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GOM48_RS05390 (GOM48_05410) - 1065158..1067059 (-) 1902 WP_235096355.1 ABC-F family ATP-binding cassette domain-containing protein -
  GOM48_RS05395 (GOM48_05415) - 1067215..1068933 (+) 1719 WP_235096356.1 phospho-sugar mutase -
  GOM48_RS05400 (GOM48_05420) - 1069044..1069391 (+) 348 WP_235096357.1 thioredoxin -
  GOM48_RS05405 (GOM48_05425) vicX 1069428..1070237 (-) 810 WP_235096358.1 MBL fold metallo-hydrolase Regulator
  GOM48_RS05410 (GOM48_05430) micB 1070239..1071588 (-) 1350 WP_235096359.1 cell wall metabolism sensor histidine kinase VicK Regulator
  GOM48_RS05415 (GOM48_05435) micA 1071581..1072288 (-) 708 WP_235096360.1 response regulator YycF Regulator
  GOM48_RS05420 (GOM48_05440) mutY 1072345..1073523 (-) 1179 WP_235096361.1 A/G-specific adenine glycosylase -
  GOM48_RS05425 (GOM48_05445) pta 1073612..1074586 (-) 975 WP_000451592.1 phosphate acetyltransferase -

Sequence

Protein


Download         Length: 269 a.a.        Molecular weight: 29919.93 Da        Isoelectric Point: 6.3429

>NTDB_id=404917 GOM48_RS05405 WP_235096358.1 1069428..1070237(-) (vicX) [Streptococcus oralis strain SOD]
MSEKGFKYSILASGSSGNSFYLETPKKKILVDAGLSGKKITSLLAEINRKPEDLDAILITHEHSDHIHGVGVLARKYGMD
LYANEKTWQAMENSKYLGKVDSSQKHIFEMGKTKTFGDIDIESFGVSHDAAAPQFYRFMKDDKSFVMLTDTGYVSDRMAG
IVENADGYLIESNHDVEILRAGSYAWRLKQRILSDLGHLSNEDGAEAMIRAMGNRTKKIYLGHLSKENNIKELAHMTMVN
QLAQADLGVGVDFKVYDTSPDTATPLTEI

Nucleotide


Download         Length: 810 bp        

>NTDB_id=404917 GOM48_RS05405 WP_235096358.1 1069428..1070237(-) (vicX) [Streptococcus oralis strain SOD]
ATGAGTGAAAAAGGCTTTAAATACAGTATTTTAGCATCAGGTTCCAGTGGAAATTCCTTTTATCTGGAAACGCCAAAAAA
GAAGATATTAGTGGATGCAGGCTTGTCTGGTAAGAAAATTACCAGCCTGCTAGCTGAAATCAATCGCAAACCAGAAGATT
TGGATGCGATTTTGATTACGCATGAGCATTCAGACCATATTCATGGAGTCGGTGTGTTGGCTCGTAAGTATGGTATGGAT
CTTTACGCTAATGAAAAAACTTGGCAGGCTATGGAAAATAGCAAGTACCTCGGTAAGGTTGATTCATCCCAGAAGCACAT
TTTTGAAATGGGTAAAACCAAAACCTTTGGCGATATCGACATTGAGAGTTTTGGGGTCAGCCACGATGCGGCAGCACCCC
AGTTTTACCGCTTTATGAAAGACGACAAGAGCTTTGTCATGCTGACCGATACAGGTTATGTTAGTGACCGTATGGCAGGA
ATTGTCGAGAATGCTGACGGTTATCTCATTGAGTCCAACCATGATGTGGAAATCTTGCGAGCAGGATCTTACGCTTGGCG
TCTCAAACAGCGAATCCTATCGGATCTCGGTCACCTCTCTAACGAGGATGGTGCTGAGGCCATGATTCGTGCAATGGGAA
ATCGAACCAAGAAAATCTACCTCGGGCATTTGTCCAAAGAGAACAATATCAAGGAGCTGGCTCATATGACTATGGTCAAT
CAGCTAGCCCAAGCGGATCTGGGAGTAGGAGTAGACTTTAAAGTTTACGACACCTCCCCAGATACAGCAACACCACTGAC
AGAGATATAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(15-223)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vicX Streptococcus mutans UA159

77.695

100

0.777

Multiple sequence alignment