Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LBUC_RS00060 Genome accession   NC_015428
Coordinates   11707..12273 (+) Length   188 a.a.
NCBI ID   WP_013726868.1    Uniprot ID   -
Organism   Lentilactobacillus buchneri NRRL B-30929     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 6707..17273
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LBUC_RS00040 (Lbuc_0006) gyrA 6715..9282 (+) 2568 WP_041805519.1 DNA gyrase subunit A -
  LBUC_RS00045 (Lbuc_0007) - 9468..10577 (+) 1110 WP_013726865.1 lactate oxidase -
  LBUC_RS00050 (Lbuc_0008) - 10783..10974 (-) 192 WP_013726866.1 hypothetical protein -
  LBUC_RS00055 (Lbuc_0009) rpsF 11376..11672 (+) 297 WP_013726867.1 30S ribosomal protein S6 -
  LBUC_RS00060 (Lbuc_0010) ssb 11707..12273 (+) 567 WP_013726868.1 single-stranded DNA-binding protein Machinery gene
  LBUC_RS00065 (Lbuc_0011) rpsR 12310..12549 (+) 240 WP_013726869.1 30S ribosomal protein S18 -
  LBUC_RS00070 (Lbuc_0012) nhaC 12651..14066 (-) 1416 WP_013726870.1 Na+/H+ antiporter NhaC -
  LBUC_RS00075 (Lbuc_0013) - 14697..16088 (+) 1392 WP_013726871.1 amino acid permease -

Sequence

Protein


Download         Length: 188 a.a.        Molecular weight: 20304.58 Da        Isoelectric Point: 4.7146

>NTDB_id=40489 LBUC_RS00060 WP_013726868.1 11707..12273(+) (ssb) [Lentilactobacillus buchneri NRRL B-30929]
MLNRAVLTGRLTRDVDLRYTQSGTAVGSFSLAVDRQFTNQQGEREADFINCVIWRKSAENFANFVHKGSLVGIDGRIQTR
NYENAQGQRVYVTEVVVENFALLEPRSARNNSNGQQNGNAPQQNNGNANPFDNHSNAGTGNSGNSNNNGGNNPTNNGGNN
GNNGNNNPNDPFANSGDSIDISDDDLPF

Nucleotide


Download         Length: 567 bp        

>NTDB_id=40489 LBUC_RS00060 WP_013726868.1 11707..12273(+) (ssb) [Lentilactobacillus buchneri NRRL B-30929]
ATGCTTAATCGTGCAGTTCTTACGGGTCGCCTAACCCGCGATGTTGATTTACGATACACTCAAAGCGGAACCGCTGTCGG
TTCGTTCTCACTTGCCGTTGATCGGCAATTTACCAATCAACAGGGGGAACGAGAGGCTGATTTCATTAACTGCGTAATCT
GGCGTAAATCCGCTGAAAACTTTGCCAACTTCGTTCATAAGGGGTCGCTTGTTGGAATTGATGGCCGTATTCAGACCAGA
AATTACGAAAACGCACAGGGACAACGTGTTTATGTGACCGAAGTTGTAGTAGAGAATTTTGCGCTGCTTGAGCCCCGTTC
TGCAAGGAACAACTCAAATGGTCAGCAAAATGGCAATGCTCCTCAACAAAATAACGGTAATGCCAATCCATTTGATAATC
ATTCAAATGCCGGTACCGGAAATAGTGGCAATTCCAACAATAACGGCGGGAATAATCCGACTAACAATGGTGGAAATAAC
GGTAATAACGGGAACAATAATCCCAATGATCCGTTCGCTAACTCTGGGGACTCGATTGACATTTCCGATGATGATTTACC
ATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

61.905

100

0.622
  ssbA Bacillus subtilis subsp. subtilis str. 168

53.886

100

0.553

Multiple sequence alignment