Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   HWU11_RS04250 Genome accession   NZ_CP058285
Coordinates   897503..898054 (-) Length   183 a.a.
NCBI ID   WP_237008072.1    Uniprot ID   -
Organism   Helicobacter pylori strain BT302     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 892503..903054
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HWU11_RS04230 ruvC 894138..894611 (-) 474 WP_108337070.1 crossover junction endodeoxyribonuclease RuvC -
  HWU11_RS04235 - 894742..895473 (+) 732 WP_000646774.1 NYN domain-containing protein -
  HWU11_RS04240 - 896265..896540 (-) 276 WP_237008071.1 hypothetical protein -
  HWU11_RS04245 - 896747..897481 (-) 735 Protein_840 DUF3519 domain-containing protein -
  HWU11_RS04250 ruvA 897503..898054 (-) 552 WP_237008072.1 Holliday junction branch migration protein RuvA Machinery gene
  HWU11_RS04255 - 898080..899924 (-) 1845 WP_237008073.1 FapA family protein -
  HWU11_RS04260 murJ 900017..901477 (+) 1461 WP_237008074.1 murein biosynthesis integral membrane protein MurJ -
  HWU11_RS04265 cysS 901478..902875 (+) 1398 WP_237008075.1 cysteine--tRNA ligase -

Sequence

Protein


Download         Length: 183 a.a.        Molecular weight: 20208.83 Da        Isoelectric Point: 9.4305

>NTDB_id=404353 HWU11_RS04250 WP_237008072.1 897503..898054(-) (ruvA) [Helicobacter pylori strain BT302]
MIVGLIGVVEKISALEVHIEVQGVVYGVQVSMRTSALLQAGQKARLKILQVVKEDAHLLYGFLEESEKILFERLLKINGV
GGRIALAILSSFSPNEFENIIATKEVKRLQQVPGIGKKLADKIMVDLIGFFIQDENKPARNEVFLALESLGFKSTEINQV
LKTLKPSLSIEAAIKEALQQLRS

Nucleotide


Download         Length: 552 bp        

>NTDB_id=404353 HWU11_RS04250 WP_237008072.1 897503..898054(-) (ruvA) [Helicobacter pylori strain BT302]
ATGATAGTGGGTTTGATAGGGGTTGTGGAAAAAATCTCTGCTTTAGAAGTGCATATAGAAGTGCAGGGGGTGGTTTATGG
GGTGCAAGTTTCTATGCGCACTTCTGCTTTGCTTCAAGCGGGCCAAAAAGCGCGTTTGAAAATCTTACAAGTGGTCAAAG
AAGATGCGCATCTTTTATACGGGTTTTTAGAAGAGAGCGAAAAAATCCTCTTTGAAAGGCTTTTAAAAATCAATGGGGTA
GGGGGTCGTATCGCTTTAGCCATTCTTTCAAGCTTTTCGCCGAATGAATTTGAAAACATTATCGCCACTAAAGAAGTCAA
AAGACTCCAGCAAGTCCCAGGTATAGGGAAAAAGCTCGCTGATAAGATCATGGTGGATTTGATTGGCTTTTTCATTCAAG
ATGAAAATAAACCCGCACGCAATGAGGTTTTTTTAGCCCTAGAGAGTTTGGGCTTTAAAAGCACCGAAATCAACCAAGTC
TTAAAAACCCTAAAACCCAGTCTCAGCATAGAAGCAGCGATTAAAGAAGCCCTACAACAACTGCGCTCTTAA

Domains

Predicted by InterProScan.

RuvA, C-terminal domain (RuvA_C)

(139-181)

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Helicobacter pylori 26695

95.628

100

0.956
  ruvA Streptococcus pneumoniae TIGR4

33.846

100

0.361
  ruvA Streptococcus pneumoniae R6

33.846

100

0.361
  ruvA Streptococcus pneumoniae D39

33.846

100

0.361