Detailed information NTG0404185

Bioinformatically predicted

Overview

• Name: pilR
• Type: Regulator
• Locus tag: GM160_RS11350
• Genome accession: NZ_CP046415
• Coordinates: 2513198..2514547 (+)
• Length: 449 a.a.
• NCBI ID: WP_156575185.1
• Uniprot ID: A0A6I6DC92
• Organism: Guyparkeria halophila strain sp2
• Function: regulate pilin expression (predicted from homology) Competence regulation

Genomic Context

Location: 2508198..2519547

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
GM160_RS11335 (GM160_11335)	ppk1	2509048..2511123 (+)	2076	WP_136867741.1	polyphosphate kinase 1	-
GM160_RS11340 (GM160_11340)	-	2511247..2511525 (+)	279	WP_136867740.1	PP0621 family protein	-
GM160_RS11345 (GM160_11345)	-	2511522..2513192 (+)	1671	WP_156575183.1	sensor histidine kinase	-
GM160_RS11350 (GM160_11350)	pilR	2513198..2514547 (+)	1350	WP_156575185.1	sigma-54-dependent transcriptional regulator	Regulator
GM160_RS11355 (GM160_11355)	sixA	2514624..2515130 (-)	507	WP_136867737.1	phosphohistidine phosphatase SixA	-
GM160_RS11360 (GM160_11360)	-	2515408..2515944 (+)	537	WP_197039153.1	FHA domain-containing protein	-
GM160_RS11365 (GM160_11365)	-	2515952..2517649 (+)	1698	WP_156575189.1	serine/threonine-protein kinase	-
GM160_RS11370 (GM160_11370)	-	2517677..2518705 (-)	1029	WP_197039154.1	LysM peptidoglycan-binding domain-containing protein	-

Sequence

Protein

• Length: 449 a.a.
• Molecular weight: 49408.43 Da
• Isoelectric Point: 5.5432

>NTDB_id=404185 GM160_RS11350 WP_156575185.1 2513198..2514547(+) (pilR) [Guyparkeria halophila strain sp2]
MAYCLIVDDEPDIRTLVALFMKREGVPTLEAADLAEAREQLDRQGEEIDLCLADMRLPDGNGLDLVDEIRRQRPHLPVAV
ITAHGQVEAAVRALKAGAFDFINKPIEQDTLRRLLRDARNLQPARPATPPAAGTEGNDSPLIGQSRAMRQLREMIGRLAR
SQAPIFIQGESGTGKELVAREIHAHSSRAGGPFVPVNCGAIPGELIESELFGHHKGSFTGATRDKPGLFRAAEGGTLFLD
EIAELPLPLQVSLLRVLQERRVRPVGGTEEVPVDVRIVSASHQDLHQAVEAGRFRQDLFFRLNVIGLRVPPLRERLDDLP
ALSTAIVARLAARDARPVPSIDPAVFQTLAAQPFPGNVRELENLLERAMALTDGDRITEEAVAPHPMMTGEEEPASALAA
CPGFIPETDEQRNVLTALQQTRWNRSEAARQLGMTLRQLRYRLQKWGVE

Nucleotide

• Length: 1350 bp

>NTDB_id=404185 GM160_RS11350 WP_156575185.1 2513198..2514547(+) (pilR) [Guyparkeria halophila strain sp2]
ATGGCGTACTGCCTGATCGTGGACGACGAGCCGGACATCCGGACGCTGGTCGCCCTGTTCATGAAACGCGAGGGTGTGCC
CACGCTGGAGGCCGCGGACCTGGCCGAGGCCCGCGAGCAGCTCGACCGGCAGGGCGAGGAAATCGACCTCTGTCTCGCCG
ACATGCGCCTGCCCGACGGCAACGGACTGGACCTGGTCGACGAGATCCGCCGCCAGCGCCCCCACCTGCCGGTGGCGGTG
ATCACGGCGCATGGCCAGGTGGAGGCCGCCGTGCGCGCGCTCAAGGCCGGCGCCTTCGACTTCATCAACAAGCCGATCGA
GCAGGACACCCTGCGCCGCCTCCTGCGCGATGCGCGCAACCTGCAGCCCGCCCGGCCCGCGACACCCCCCGCCGCCGGGA
CGGAGGGCAATGACTCGCCGTTGATCGGCCAGTCACGCGCCATGCGCCAATTGCGGGAAATGATCGGGCGGCTGGCCCGA
TCCCAGGCACCGATCTTCATCCAGGGCGAGTCCGGTACCGGCAAGGAGCTGGTCGCCCGCGAAATCCACGCGCACAGCAG
CCGCGCGGGCGGGCCGTTCGTGCCGGTCAACTGCGGCGCGATCCCCGGCGAACTGATCGAATCCGAGCTGTTCGGCCACC
ACAAGGGCTCGTTCACCGGCGCGACCCGCGACAAACCGGGCCTCTTCCGCGCCGCCGAGGGCGGCACGCTGTTTCTCGAC
GAGATCGCCGAGCTGCCGCTGCCGCTGCAGGTCTCCCTGCTGCGGGTACTGCAGGAGCGCCGGGTGCGGCCGGTGGGCGG
CACCGAGGAGGTGCCGGTGGACGTGCGCATCGTCTCGGCCTCGCACCAGGACCTTCACCAGGCGGTGGAGGCGGGACGCT
TTCGCCAGGACCTGTTCTTCCGCCTCAACGTGATCGGCCTGCGCGTGCCGCCGCTGCGCGAACGCCTCGACGACCTGCCG
GCGCTATCCACGGCGATCGTCGCCCGGCTGGCCGCGCGCGACGCGCGCCCGGTGCCGTCGATCGACCCGGCGGTCTTTCA
GACACTGGCGGCGCAGCCGTTCCCGGGCAACGTGCGCGAACTGGAGAACCTGCTCGAACGGGCCATGGCCCTGACCGACG
GCGATCGGATCACCGAGGAGGCCGTCGCGCCGCACCCGATGATGACCGGCGAGGAGGAACCCGCCTCGGCGCTGGCCGCT
TGCCCCGGCTTCATCCCGGAGACCGATGAGCAGCGCAACGTGCTCACCGCCCTGCAGCAGACCCGTTGGAACCGCAGCGA
GGCCGCCCGCCAGCTGGGCATGACCCTGCGCCAGCTGCGTTACCGGTTGCAGAAGTGGGGTGTCGAATAG

Domains

Predicted by InterproScan.

• Bacterial regulatory protein, Fis family (HTH_8) (414-446)

• Sigma-54 interaction domain (Sigma54_activat) (141-307)

• Response regulator receiver domain (Response_reg) (5-115)

3D structure

• AlphaFold DB: A0A6I6DC92

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilR	Pseudomonas aeruginosa PAK	52.539	100	0.53
pilR	Acinetobacter baumannii strain A118	46.767	100	0.483