Detailed information
Bioinformatically predicted
Overview
| Name | pilO | Type | Machinery gene |
| Locus tag | GNY17_RS13410 | Genome accession | NZ_CP046411 |
| Coordinates | 2619982..2620575 (+) | Length | 197 a.a. |
| NCBI ID | WP_025793367.1 | Uniprot ID | - |
| Organism | Vibrio parahaemolyticus strain 19-021-D1 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 2614982..2625575
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GNY17_RS13395 (GNY17_13395) | - | 2615698..2618268 (-) | 2571 | WP_005480476.1 | penicillin-binding protein 1A | - |
| GNY17_RS13400 (GNY17_13400) | pilM | 2618411..2619427 (+) | 1017 | WP_025793368.1 | type IV pilus biogenesis protein PilM | Machinery gene |
| GNY17_RS13405 (GNY17_13405) | pilN | 2619411..2619989 (+) | 579 | WP_015297396.1 | PilN domain-containing protein | Machinery gene |
| GNY17_RS13410 (GNY17_13410) | pilO | 2619982..2620575 (+) | 594 | WP_025793367.1 | type 4a pilus biogenesis protein PilO | Machinery gene |
| GNY17_RS13415 (GNY17_13415) | pilP | 2620565..2621080 (+) | 516 | WP_023585576.1 | pilus assembly protein PilP | Machinery gene |
| GNY17_RS13420 (GNY17_13420) | pilQ | 2621112..2622860 (+) | 1749 | WP_005488227.1 | type IV pilus secretin PilQ | Machinery gene |
| GNY17_RS13425 (GNY17_13425) | aroK | 2623049..2623567 (+) | 519 | WP_005381319.1 | shikimate kinase AroK | - |
| GNY17_RS13430 (GNY17_13430) | aroB | 2623599..2624699 (+) | 1101 | WP_005480443.1 | 3-dehydroquinate synthase | - |
Sequence
Protein
Download Length: 197 a.a. Molecular weight: 23103.69 Da Isoelectric Point: 4.8225
>NTDB_id=404142 GNY17_RS13410 WP_025793367.1 2619982..2620575(+) (pilO) [Vibrio parahaemolyticus strain 19-021-D1]
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
IFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
MVNWQDLEMDEIAEWPLLPQLVVICLLVLLIQGFGYWFYLKPEEARLNNLIQEEQTLKVALRIKANKVAALPQLQSQLDE
LTTRYELLLQQLPAQKELATMLASVNELGIDNKLTFTRIDWGEKQSENFLYRLPLNIELTGDFHDIGRFSQAIATLPRII
IFKDVTWQRVSQESETLHFRVRANTYQFKPEEKKDEK
Nucleotide
Download Length: 594 bp
>NTDB_id=404142 GNY17_RS13410 WP_025793367.1 2619982..2620575(+) (pilO) [Vibrio parahaemolyticus strain 19-021-D1]
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ATCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
ATGGTTAATTGGCAAGATCTAGAAATGGATGAGATTGCTGAATGGCCATTACTGCCTCAGCTTGTAGTGATCTGCCTGCT
TGTTCTTCTTATCCAAGGGTTTGGTTATTGGTTTTACTTAAAGCCAGAAGAGGCTCGCTTGAACAATTTGATTCAAGAGG
AGCAAACATTAAAAGTGGCATTGCGCATAAAAGCCAACAAGGTGGCTGCATTGCCTCAATTGCAATCTCAACTGGACGAG
CTCACTACGCGTTATGAGTTGCTGTTGCAACAACTACCGGCACAAAAAGAGTTGGCCACAATGTTGGCGTCGGTAAACGA
ACTCGGTATCGACAACAAGTTAACGTTTACTCGAATCGATTGGGGAGAAAAGCAATCTGAAAACTTCCTGTATCGATTGC
CACTAAATATCGAGCTAACAGGTGATTTCCACGATATCGGTCGTTTTTCACAGGCCATTGCCACACTGCCACGCATCATC
ATCTTTAAAGACGTGACTTGGCAGCGTGTCAGCCAAGAGAGTGAAACTTTGCACTTCCGAGTGAGAGCAAACACTTATCA
GTTCAAGCCTGAGGAAAAGAAAGATGAGAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilO | Vibrio campbellii strain DS40M4 |
93.684 |
96.447 |
0.904 |
| pilO | Vibrio cholerae strain A1552 |
72.589 |
100 |
0.726 |