Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilM   Type   Machinery gene
Locus tag   GNY17_RS13400 Genome accession   NZ_CP046411
Coordinates   2618411..2619427 (+) Length   338 a.a.
NCBI ID   WP_025793368.1    Uniprot ID   -
Organism   Vibrio parahaemolyticus strain 19-021-D1     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2613411..2624427
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GNY17_RS13385 (GNY17_13385) - 2613835..2614563 (-) 729 WP_015297397.1 redoxin family protein -
  GNY17_RS13390 (GNY17_13390) oxyR 2614734..2615642 (+) 909 WP_005465160.1 DNA-binding transcriptional regulator OxyR -
  GNY17_RS13395 (GNY17_13395) - 2615698..2618268 (-) 2571 WP_005480476.1 penicillin-binding protein 1A -
  GNY17_RS13400 (GNY17_13400) pilM 2618411..2619427 (+) 1017 WP_025793368.1 type IV pilus biogenesis protein PilM Machinery gene
  GNY17_RS13405 (GNY17_13405) pilN 2619411..2619989 (+) 579 WP_015297396.1 PilN domain-containing protein Machinery gene
  GNY17_RS13410 (GNY17_13410) pilO 2619982..2620575 (+) 594 WP_025793367.1 type 4a pilus biogenesis protein PilO Machinery gene
  GNY17_RS13415 (GNY17_13415) pilP 2620565..2621080 (+) 516 WP_023585576.1 pilus assembly protein PilP Machinery gene
  GNY17_RS13420 (GNY17_13420) pilQ 2621112..2622860 (+) 1749 WP_005488227.1 type IV pilus secretin PilQ Machinery gene
  GNY17_RS13425 (GNY17_13425) aroK 2623049..2623567 (+) 519 WP_005381319.1 shikimate kinase AroK -

Sequence

Protein


Download         Length: 338 a.a.        Molecular weight: 37780.32 Da        Isoelectric Point: 6.8323

>NTDB_id=404140 GNY17_RS13400 WP_025793368.1 2618411..2619427(+) (pilM) [Vibrio parahaemolyticus strain 19-021-D1]
MDKLIVTGIDIGHNSLKAVVLKPIGDQYALLGYKEILLKEGIVAENNTINHQEIVKTLKQMKKELPFGAKRVAISVPDNS
VISKKLQIEQSLDESEIEFAVVQAFSHQSPFPVEELSLDFVRLRAEEGMRGTDSYQVFATRKDVVESRVEALQQSGLKPV
LVDVHSQSLGHIWKLAAERFPEKNKYCLLDIGSLASSFTMFTEQGELFHKEFACGTRISMGTSQEDLLSDDAQAKTEQFN
RQVVERVKRQMQLYTSINGSQNIKGIWLSGEGASTPMMAEELSHQLALECELLNPLGLFEMKVSKRKRRAADWQHFSTAA
GLAVRGIHWLGGVRAVSH

Nucleotide


Download         Length: 1017 bp        

>NTDB_id=404140 GNY17_RS13400 WP_025793368.1 2618411..2619427(+) (pilM) [Vibrio parahaemolyticus strain 19-021-D1]
ATGGATAAGCTAATCGTTACCGGCATAGATATTGGCCATAACAGCCTCAAAGCCGTAGTACTTAAACCCATTGGCGATCA
ATACGCCTTACTGGGTTACAAAGAAATATTACTTAAGGAAGGTATTGTCGCTGAAAATAACACTATAAATCATCAAGAAA
TTGTAAAGACCCTAAAGCAGATGAAAAAAGAGCTGCCTTTTGGGGCCAAGCGAGTGGCAATTTCTGTTCCAGACAACTCA
GTTATTAGCAAGAAACTGCAAATCGAACAAAGCCTTGATGAGAGCGAAATCGAGTTTGCGGTGGTACAAGCTTTTTCTCA
TCAATCTCCTTTTCCTGTGGAAGAACTGAGTTTGGATTTTGTACGCCTTCGTGCTGAAGAAGGGATGCGTGGAACGGACA
GTTATCAAGTATTCGCTACGCGCAAAGATGTGGTTGAAAGCCGAGTTGAGGCGTTACAACAGTCTGGTTTAAAGCCTGTG
TTGGTTGACGTGCACTCTCAAAGCCTAGGTCATATCTGGAAGCTTGCCGCAGAGCGTTTTCCTGAAAAAAACAAATACTG
TTTGTTAGACATCGGCTCGTTAGCGAGTTCATTCACCATGTTTACCGAGCAAGGCGAACTGTTTCATAAGGAGTTTGCGT
GCGGTACTCGTATTTCAATGGGGACGTCACAAGAAGACTTACTCTCTGATGATGCTCAAGCCAAAACGGAACAGTTCAAT
CGTCAAGTGGTTGAGCGCGTAAAACGTCAAATGCAGCTCTATACCTCGATCAACGGTTCGCAAAACATCAAAGGCATTTG
GTTATCGGGCGAGGGGGCATCGACGCCAATGATGGCAGAAGAGCTGTCGCATCAGTTGGCATTGGAGTGTGAGTTGTTAA
ATCCACTCGGACTGTTTGAAATGAAAGTGTCGAAACGCAAGCGCCGAGCGGCCGATTGGCAACATTTTTCGACGGCTGCA
GGGCTGGCGGTGCGTGGCATTCATTGGTTAGGAGGTGTGCGTGCTGTATCGCATTAA

Domains

Predicted by InterproScan.

Type IV pilus assembly protein PilM; (PilM_2)

(8-326)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilM Vibrio campbellii strain DS40M4

84.911

100

0.849
  pilM Vibrio cholerae strain A1552

48.071

99.704

0.479

Multiple sequence alignment