Detailed information NTG0040400

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: MDS_RS08350
• Genome accession: NC_015410
• Coordinates: 1812903..1815116 (+)
• Length: 737 a.a.
• NCBI ID: WP_013714800.1
• Uniprot ID: -
• Organism: Ectopseudomonas mendocina NK-01
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1807903..1820116

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MDS_RS08325 (MDS_1659)	-	1808149..1808715 (-)	567	WP_013714794.1	PilZ domain-containing protein	-
MDS_RS08330 (MDS_1661)	-	1809006..1810253 (+)	1248	WP_017361511.1	lipoprotein-releasing ABC transporter permease subunit	-
MDS_RS08335 (MDS_1662)	lolD	1810258..1810959 (+)	702	WP_013714797.1	lipoprotein-releasing ABC transporter ATP-binding protein LolD	-
MDS_RS08340 (MDS_1663)	-	1810959..1812203 (+)	1245	WP_013714798.1	lipoprotein-releasing ABC transporter permease subunit	-
MDS_RS08345 (MDS_1664)	-	1812237..1812764 (-)	528	WP_013714799.1	DUF2062 domain-containing protein	-
MDS_RS08350 (MDS_1665)	comA	1812903..1815116 (+)	2214	WP_013714800.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
MDS_RS08355 (MDS_1666)	-	1815173..1815805 (+)	633	WP_013714801.1	MotA/TolQ/ExbB proton channel family protein	-
MDS_RS08360 (MDS_1667)	-	1815802..1816230 (+)	429	WP_013714802.1	biopolymer transporter ExbD	-
MDS_RS08365 (MDS_1668)	lpxK	1816231..1817232 (+)	1002	WP_013714803.1	tetraacyldisaccharide 4'-kinase	-
MDS_RS08370 (MDS_1669)	-	1817255..1817440 (+)	186	WP_013714804.1	Trm112 family protein	-
MDS_RS08375 (MDS_1670)	kdsB	1817441..1818205 (+)	765	WP_013714805.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
MDS_RS08380 (MDS_1671)	-	1818205..1818669 (+)	465	WP_013714806.1	low molecular weight protein-tyrosine-phosphatase	-
MDS_RS08385 (MDS_1672)	murB	1818666..1819685 (+)	1020	WP_013714807.1	UDP-N-acetylmuramate dehydrogenase	-

Sequence

Protein

• Length: 737 a.a.
• Molecular weight: 80070.20 Da
• Isoelectric Point: 9.0333

>NTDB_id=40400 MDS_RS08350 WP_013714800.1 1812903..1815116(+) (comA) [Ectopseudomonas mendocina NK-01]
MLALALGLLSLRFLPSLPPGWLLLVAACVGLALLLSRLYPLGFFLLGLAWACNSAQWALEDRLGPELDGRTLWLEGRVVG
LPEVSDGVVRFLLEDAHSRRAELPKRLRVAWYDGPTVQGGERWRLAVNLKRPHGLVNPQSFDYEAWLLAQRIGATGTIKS
GQRLAPASGLGSWRDSLRQRLLAAPAVEREGAIAALVLGDGSGLSTEDWRLLQHTGTVHLMVISGQHIGLLAGFLYGLVA
LLAKLGAWPARWPWLPCACALALGGALTYGLLAGFEVPVRRACVMVALVLLWRMRFRHLGAWWPLLLALIVVLLLEPLAS
LQPGFWLSFSAVAILALVFGGRLGVWGWWRGLTRAQWTMAIGLLPMMLVLGLPVSSSGPLANLIAVPWVGLVVVPLALLG
TLLLPIPMLGEGLLWLAGGALHLLFELLGIIAGWLPAWLPSVLPLWAWWLAAAGALLLLLPAGVPLRLPGLALLLPALLL
PAPHLDDGRADIWVLDVGQGLAVLVRTREHALLYDAGPRFGDFDTGERIVLPSLRALNLRQLDVMLLSHADNDHAGGAAA
IKAGMPVSRVVSGEPRRLADALGAEACESGQSWQWNEVVFRLWQWERASSGNQLSCVLQIEAAGERLLLTGDIDVQAERA
LMQADFPLVSRWLLAPHHGSRTSSSQAFIDAVGAQHVLITRSRHNAFGHPHPQVLERYRAAGVLVHDTALDGALHLRLGE
HGAARALRREPRFWREK

Nucleotide

• Length: 2214 bp

>NTDB_id=40400 MDS_RS08350 WP_013714800.1 1812903..1815116(+) (comA) [Ectopseudomonas mendocina NK-01]
ATGTTGGCGCTGGCCTTGGGGCTGCTCAGCTTGCGCTTTCTACCGAGCCTGCCGCCAGGCTGGCTGTTGCTGGTTGCAGC
TTGTGTCGGCCTGGCTTTGCTGCTCTCGCGCCTCTATCCGCTGGGGTTCTTTTTGCTGGGGCTGGCCTGGGCCTGCAATT
CTGCGCAGTGGGCGCTGGAGGATCGCCTCGGCCCTGAGCTCGACGGCCGCACGCTATGGCTGGAAGGGCGGGTGGTCGGA
TTGCCCGAGGTATCCGATGGTGTGGTGCGCTTCCTGCTGGAGGATGCGCACTCGCGTCGTGCCGAGCTGCCAAAAAGGTT
GCGGGTGGCCTGGTATGACGGGCCGACAGTGCAGGGCGGCGAGCGCTGGCGTCTGGCGGTCAACCTGAAGCGGCCGCATG
GCCTGGTCAATCCGCAGAGCTTCGACTACGAAGCCTGGTTGCTGGCGCAGCGTATCGGTGCCACAGGCACGATCAAATCC
GGTCAGCGCCTTGCTCCAGCTTCGGGCCTGGGCAGTTGGCGTGACAGTCTGCGCCAGCGCTTGTTGGCAGCGCCGGCTGT
TGAGCGCGAAGGCGCCATCGCTGCGTTGGTACTGGGCGACGGTTCTGGCTTGAGCACCGAAGATTGGCGCCTGTTGCAGC
ACACCGGCACGGTGCACCTGATGGTCATTTCCGGGCAGCACATCGGACTGCTGGCCGGCTTTCTCTATGGTTTGGTGGCC
TTGCTGGCCAAGCTCGGCGCATGGCCGGCGCGTTGGCCATGGCTACCTTGCGCCTGTGCTCTGGCGCTGGGCGGGGCCTT
GACCTATGGCTTGCTGGCGGGCTTCGAGGTGCCGGTGCGCAGGGCTTGCGTGATGGTCGCGTTGGTGCTGCTGTGGCGCA
TGCGCTTCCGTCATCTTGGTGCGTGGTGGCCATTGTTACTGGCCTTGATCGTGGTTCTGCTGCTGGAGCCGCTGGCATCG
TTGCAGCCGGGTTTCTGGTTGTCGTTTTCGGCGGTGGCGATTCTGGCTCTTGTGTTTGGCGGTCGACTTGGCGTCTGGGG
TTGGTGGCGCGGGCTCACGCGTGCGCAATGGACCATGGCCATCGGCCTGTTGCCGATGATGCTGGTCCTCGGCCTGCCGG
TCAGCAGCAGCGGGCCGTTGGCCAATCTGATCGCCGTCCCCTGGGTCGGATTGGTGGTGGTGCCTTTGGCCTTGCTGGGC
ACCCTGCTGCTGCCTATACCAATGCTGGGCGAAGGGCTGTTGTGGCTGGCCGGTGGTGCGCTGCACCTGCTGTTCGAGTT
GCTCGGCATCATCGCCGGCTGGCTACCCGCCTGGTTGCCGAGCGTTCTGCCGCTGTGGGCATGGTGGCTGGCGGCAGCTG
GTGCTTTGCTGCTCCTTTTACCGGCCGGGGTGCCGCTGCGGTTGCCCGGTCTTGCGCTGTTGTTGCCCGCATTGTTATTG
CCAGCGCCGCATCTGGATGATGGTCGCGCCGACATCTGGGTGCTGGATGTGGGGCAGGGGCTGGCGGTGCTGGTGCGTAC
CCGAGAGCATGCTCTGCTGTACGATGCTGGGCCGCGCTTTGGTGATTTCGATACCGGTGAGCGCATCGTCCTGCCCTCGT
TGCGGGCGCTGAACCTCAGGCAGCTCGACGTGATGCTGCTCAGCCATGCCGATAACGATCATGCTGGCGGCGCGGCCGCG
ATCAAGGCCGGTATGCCGGTATCGAGGGTGGTCAGTGGTGAACCGCGAAGGCTGGCCGATGCGCTCGGCGCCGAAGCGTG
CGAGTCAGGACAAAGCTGGCAATGGAACGAGGTGGTCTTCAGGCTGTGGCAGTGGGAACGCGCCAGCTCCGGCAACCAGC
TGTCGTGCGTATTGCAGATAGAGGCTGCGGGCGAACGCCTGCTATTGACCGGCGATATCGACGTACAGGCCGAGCGGGCG
CTGATGCAGGCCGACTTTCCCCTGGTCTCGCGGTGGCTGCTGGCCCCTCATCATGGCAGTCGCACCTCGTCCAGCCAGGC
GTTCATCGATGCGGTTGGTGCGCAGCATGTGCTGATTACCCGCAGCCGCCACAATGCCTTCGGTCATCCTCATCCGCAGG
TGCTGGAGCGTTATCGGGCAGCAGGCGTGTTGGTCCATGACACGGCGCTCGATGGCGCGCTGCATCTGCGCCTGGGCGAG
CATGGCGCAGCGCGGGCATTGCGACGCGAGCCACGTTTCTGGCGGGAAAAATGA

Domains

Predicted by InterproScan.

• Metallo-beta-lactamase superfamily (Lactamase_B) (496-673)

• Domain of unknown function (DUF4131) (DUF4131) (17-163)

• Competence protein (Competence) (196-460)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	67.967	97.422	0.662
comA	Ralstonia pseudosolanacearum GMI1000	36.205	100	0.393