Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA/comEC   Type   Machinery gene
Locus tag   GK020_RS05260 Genome accession   NZ_CP046392
Coordinates   1090023..1092425 (+) Length   800 a.a.
NCBI ID   WP_171501537.1    Uniprot ID   -
Organism   Acinetobacter indicus strain WMB-7     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IS/Tn 1092465..1093142 1090023..1092425 flank 40


Gene organization within MGE regions


Location: 1090023..1093142
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GK020_RS05260 comA/comEC 1090023..1092425 (+) 2403 WP_171501537.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  GK020_RS05265 - 1092465..1093142 (-) 678 WP_000644963.1 IS1595 family transposase -

Sequence

Protein


Download         Length: 800 a.a.        Molecular weight: 91537.61 Da        Isoelectric Point: 7.6733

>NTDB_id=403797 GK020_RS05260 WP_171501537.1 1090023..1092425(+) (comA/comEC) [Acinetobacter indicus strain WMB-7]
MFKIMGAGWILGIACMSKTLWPMLDFPLWLSGLLLIILLLQQIAALHWSHLGIQLINVCIAFVITFLLGLNFAQSQLQER
LIFRELIRQPAEVVVYVQQINQLGSSQIRQPVQVLNRHSQPVQWLALLPAEQELQLGRYYRLQGQTLPAHSFAVPGAFDV
EQWYLQQNIMSGFQVQSIVELTESELYRLGFGAYLSQHQQLWPQFKLWIETQRLQIRDFIQQQALRHPGLMLALLTGDKS
LLDEATEQQFQRFGMSHLLAISGPHVLIFAAMLCFVLQRMVTRYWPQLYTRLPRSYLLLLPFMGCVFVYCAYVGFEIPAL
RTLLICLVAGTCLLLKQPIQPLSLLIGSASLLLLLDPLSVLSAAFWLSYGACFVLLRIYQTLRQQPAHPQQTLIQKLWQG
FRLLFESQWKIFIALFPLMIIFFKQIAWIAPLSNLLAIPWIGLVIVPLDILAGLSFYLAEPLSQLLFQLNDLALSLLLGC
LHLLDLLFAPQLIPVALSPPMLLSLVLGLMILFLPAGLVPKAWSTLCLLPLLFQDQFSRQVELTVLDVGQGQAIFLRYRE
HSMMIDMGGHYDEQKWSIGRQIIQPFLSVKGVQQLDYLWLTHLDQDHSGAYQTLKPQLQVQQVYANAQLEVHPDSRFDYC
RQGQQWQWQPGIQIQVLSPKPEQLNPAEQQKNESSCVLLVEFAQAQPYSRFLLMGDAGWPTEYQLLQDYPGLKVDVLVLG
HHGSRHSSSYQFLKQLEPKLAIASAGLNNRYGHPSTQVQARLNALEIPLWQTAQQGSIQFYPTENEVLPYRHTRVWLRRD

Nucleotide


Download         Length: 2403 bp        

>NTDB_id=403797 GK020_RS05260 WP_171501537.1 1090023..1092425(+) (comA/comEC) [Acinetobacter indicus strain WMB-7]
ATGTTCAAAATCATGGGGGCCGGCTGGATTTTAGGTATTGCCTGTATGAGCAAAACGCTATGGCCGATGCTGGATTTCCC
GCTCTGGTTGTCAGGCCTGCTACTGATCATTCTGCTTTTACAGCAAATAGCCGCTTTACATTGGTCCCATCTGGGCATCC
AATTGATCAATGTCTGTATAGCATTTGTCATTACATTTTTGTTGGGGCTGAATTTTGCCCAAAGCCAGTTGCAAGAGCGG
TTGATATTTCGTGAACTGATTCGCCAGCCGGCAGAGGTGGTGGTCTATGTCCAGCAAATCAATCAGCTGGGTAGCAGCCA
GATCCGGCAACCGGTTCAGGTACTAAACCGGCATAGCCAGCCGGTGCAATGGCTGGCCTTGCTACCGGCTGAACAGGAAC
TACAGCTGGGGCGTTATTATCGTTTACAGGGGCAGACCTTGCCGGCGCACAGTTTTGCCGTTCCGGGTGCGTTTGATGTA
GAGCAGTGGTATCTCCAGCAAAATATCATGAGCGGCTTTCAGGTCCAGTCGATTGTGGAACTGACTGAATCGGAACTTTA
TCGGCTGGGATTTGGGGCCTATTTAAGCCAGCATCAACAACTCTGGCCGCAGTTTAAATTGTGGATCGAAACGCAGCGTT
TACAGATTCGTGATTTTATCCAGCAGCAGGCATTGCGGCATCCCGGTTTAATGTTGGCACTGCTGACCGGCGATAAAAGT
TTACTCGATGAAGCCACCGAGCAGCAGTTTCAGCGTTTCGGGATGAGTCATTTGCTGGCGATTTCCGGGCCGCATGTGCT
GATTTTTGCCGCCATGCTGTGTTTTGTGCTGCAGCGCATGGTCACCCGCTATTGGCCCCAATTATATACGCGACTGCCCC
GAAGTTATCTGCTGTTGCTGCCGTTTATGGGCTGTGTATTTGTATATTGTGCCTATGTTGGGTTTGAAATTCCGGCGCTC
AGGACTTTACTGATTTGTCTGGTGGCCGGCACCTGTCTGTTGCTAAAGCAGCCGATACAGCCGCTGTCTTTGCTGATCGG
TAGTGCTTCATTATTGCTGCTGCTTGATCCGTTGAGTGTGCTGTCGGCGGCATTCTGGCTGTCTTATGGCGCCTGCTTTG
TGCTGTTAAGGATTTATCAAACCCTCCGGCAGCAACCGGCGCATCCGCAGCAGACGTTAATACAGAAATTGTGGCAGGGC
TTCCGGCTGTTATTTGAATCGCAATGGAAAATTTTTATTGCGCTGTTTCCGCTAATGATTATTTTCTTCAAGCAGATTGC
CTGGATTGCGCCGCTGAGTAATCTATTGGCGATTCCCTGGATCGGACTGGTGATTGTACCGCTGGATATTCTGGCTGGTT
TAAGTTTTTATCTGGCGGAACCGCTGAGTCAGTTGCTGTTTCAGCTCAATGATCTGGCTTTAAGCCTGTTATTGGGCTGC
TTACACTTGCTGGATCTGCTGTTTGCACCACAACTGATTCCGGTTGCGCTGAGTCCACCGATGTTGCTGAGTCTGGTGCT
GGGGCTGATGATTTTATTTCTCCCCGCAGGTCTAGTACCTAAAGCCTGGTCAACGCTGTGCTTGTTGCCTTTACTTTTTC
AGGATCAGTTTTCTCGGCAGGTGGAACTTACTGTGCTGGATGTTGGGCAGGGGCAGGCGATCTTTTTACGCTATCGTGAA
CATAGCATGATGATTGATATGGGCGGTCATTATGATGAACAGAAATGGAGTATCGGCCGGCAGATTATCCAGCCCTTTTT
AAGTGTCAAAGGCGTGCAGCAATTAGATTATTTATGGTTGACCCATCTGGATCAGGATCATAGCGGTGCTTATCAGACCT
TAAAACCACAGTTACAGGTGCAACAGGTCTATGCCAATGCTCAGCTTGAGGTGCATCCTGACAGTCGCTTTGACTATTGC
CGGCAGGGACAGCAATGGCAGTGGCAGCCGGGTATCCAGATTCAGGTACTCTCTCCGAAACCGGAGCAGTTAAATCCTGC
AGAACAGCAGAAAAATGAAAGTTCCTGTGTGCTGCTGGTTGAGTTTGCACAGGCTCAGCCTTATTCACGCTTTTTATTGA
TGGGCGATGCAGGCTGGCCGACTGAATATCAGTTATTACAGGATTATCCGGGTTTAAAAGTGGATGTGCTGGTGCTCGGC
CATCATGGTAGCCGGCACAGTTCATCTTATCAGTTTTTAAAACAGCTGGAGCCTAAACTGGCAATTGCATCGGCGGGGCT
GAATAACCGTTATGGGCATCCAAGCACGCAGGTACAAGCCCGACTGAACGCCTTAGAAATTCCATTATGGCAAACCGCGC
AGCAGGGCAGCATCCAGTTTTATCCCACTGAGAATGAGGTGCTGCCGTACCGGCATACGCGGGTTTGGCTGCGGCGTGAT
TAA

Domains

Predicted by InterproScan.

Metallo-beta-lactamase superfamily (Lactamase_B)

(547-647)

Competence protein (Competence)

(234-515)

Domain of unknown function (DUF4131) (DUF4131)

(25-179)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA/comEC Acinetobacter baumannii D1279779

47.549

100

0.485
  comA/comEC Acinetobacter baylyi ADP1

47.842

100

0.485
  comA/comEC Acinetobacter baumannii strain A118

46.936

100

0.479

Multiple sequence alignment