Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiC   Type   Regulator
Locus tag   GL187_RS08985 Genome accession   NZ_CP046379
Coordinates   1777565..1779061 (-) Length   498 a.a.
NCBI ID   WP_000759903.1    Uniprot ID   A0A0I7G6D1
Organism   Streptococcus pneumoniae strain 563     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1772565..1784061
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL187_RS08965 (GL187_09090) - 1773405..1774007 (-) 603 WP_024477719.1 ABC transporter substrate-binding protein -
  GL187_RS08970 (GL187_09095) amiF 1774626..1775552 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  GL187_RS08975 (GL187_09100) amiE 1775563..1776630 (-) 1068 WP_000159556.1 ABC transporter ATP-binding protein Regulator
  GL187_RS08980 (GL187_09105) amiD 1776639..1777565 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  GL187_RS08985 (GL187_09110) amiC 1777565..1779061 (-) 1497 WP_000759903.1 ABC transporter permease Regulator
  GL187_RS08990 (GL187_09115) amiA3 1779128..1781107 (-) 1980 WP_000742232.1 peptide ABC transporter substrate-binding protein Regulator
  GL187_RS08995 (GL187_09120) - 1781689..1783035 (-) 1347 WP_024477720.1 IS1380-like element ISSpn5 family transposase -

Sequence

Protein


Download         Length: 498 a.a.        Molecular weight: 55625.14 Da        Isoelectric Point: 9.4436

>NTDB_id=403698 GL187_RS08985 WP_000759903.1 1777565..1779061(-) (amiC) [Streptococcus pneumoniae strain 563]
MKKYIFMRVLRSLVSIFLVTTLTYTIIYTLVPRKLIFKQDPNYNKIATTADKRDNYENTVFERMGYIEYYDTKELQEKAS
SMDSSVTVEANATNKAIYEKYINQLGHGWTLGEFTESGQFYATREIPIFERVFHFYANLIDIDHTNKIQDPENPDLKRYL
RFENDPAIGWSLVGSGTKHKYLLYFNSQFPFVHQNFVNLNLGDSYPTYANTPVLQVITQGQGQTKTAQVQFPTGKKTSSV
NIYSRTYKSPSQADSREVASYGKDDPYTATESNYQYPSMIVSSAITGLIGLVLAYALAVPLGSAMARFKNTWIDSLSTGA
LTFLLALPTIALVYIVRLIGSSISLPDSFPILGAGDWRSYVLPAVILGLLGAPGTAIWIRRYMIDLQSQDFVRFARAKGL
SEKEISNKHIFKNAMVPLVSGIPGAIIGVIGGATLTETVFAFPGMGKMLIDSVKASNNSMVVGLVFIFTCISIFSRLLGD
IWMTIIDPRIKLTEKGGK

Nucleotide


Download         Length: 1497 bp        

>NTDB_id=403698 GL187_RS08985 WP_000759903.1 1777565..1779061(-) (amiC) [Streptococcus pneumoniae strain 563]
ATGAAAAAATATATTTTTATGCGTGTTTTGCGGTCATTGGTTTCGATTTTCTTAGTAACGACTTTGACCTACACGATTAT
CTATACCTTGGTTCCTCGAAAATTGATTTTCAAGCAGGATCCTAACTATAATAAAATTGCGACAACGGCTGATAAACGTG
ATAACTATGAAAATACTGTGTTTGAGCGTATGGGCTACATTGAGTATTACGATACTAAAGAGTTGCAAGAAAAGGCAAGT
AGCATGGATTCTTCTGTAACAGTAGAAGCAAATGCGACCAATAAAGCTATTTATGAAAAGTACATCAATCAATTAGGTCA
TGGTTGGACTTTGGGAGAATTTACTGAAAGTGGTCAATTCTATGCTACTCGTGAAATTCCAATTTTTGAACGTGTTTTTC
ACTTCTATGCTAACTTGATTGACATTGACCATACAAATAAAATCCAAGACCCTGAAAATCCAGACTTGAAACGCTACCTT
CGTTTTGAAAATGATCCAGCTATCGGATGGTCATTGGTCGGTTCAGGAACTAAACATAAATATCTCTTGTACTTTAACAG
TCAGTTCCCATTTGTTCATCAAAACTTTGTGAACTTGAATTTAGGTGACTCTTACCCAACCTATGCTAATACACCAGTTC
TTCAGGTTATTACTCAAGGTCAAGGACAAACCAAAACTGCCCAAGTTCAGTTCCCAACAGGTAAGAAAACGTCTTCTGTA
AATATTTACTCAAGAACCTACAAGTCACCTAGTCAGGCTGACTCTCGTGAAGTAGCTAGCTATGGGAAAGATGATCCTTA
TACAGCGACTGAAAGTAATTACCAATATCCATCTATGATTGTCAGCTCTGCTATTACTGGTTTGATTGGTTTGGTTCTTG
CCTATGCTCTTGCCGTGCCACTTGGTTCAGCCATGGCTCGTTTCAAGAACACTTGGATTGATAGCCTCTCAACAGGGGCT
TTGACCTTCTTGCTTGCTCTTCCAACGATTGCCTTGGTTTACATCGTTCGATTGATTGGATCATCTATTTCCCTTCCAGA
TTCATTCCCTATCTTGGGAGCTGGAGATTGGCGTTCTTACGTTTTACCAGCAGTCATCCTTGGTTTGTTGGGTGCTCCTG
GTACAGCCATTTGGATTCGTCGTTACATGATTGACTTGCAATCTCAAGACTTTGTTCGTTTCGCTCGTGCAAAAGGTTTG
TCTGAAAAAGAAATTTCAAACAAACACATCTTTAAAAATGCCATGGTTCCGCTGGTTTCAGGAATTCCTGGTGCCATTAT
TGGGGTTATCGGTGGTGCAACCCTTACTGAAACAGTCTTCGCCTTCCCAGGTATGGGTAAAATGTTGATTGACTCTGTAA
AAGCATCTAATAACTCTATGGTCGTTGGTCTTGTCTTCATCTTTACATGTATTTCTATCTTCTCACGTCTTTTGGGAGAT
ATTTGGATGACTATTATTGACCCACGTATTAAATTGACTGAGAAAGGAGGCAAATAA

Domains

Predicted by InterproScan.

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(298-491)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0I7G6D1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiC Streptococcus salivarius strain HSISS4

77.108

100

0.771
  amiC Streptococcus thermophilus LMG 18311

76.908

100

0.769
  amiC Streptococcus thermophilus LMD-9

76.506

100

0.765

Multiple sequence alignment