Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   CAR_RS00040 Genome accession   NC_015391
Coordinates   9570..10094 (+) Length   174 a.a.
NCBI ID   WP_041556011.1    Uniprot ID   -
Organism   Carnobacterium sp. 17-4     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4570..15094
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CAR_RS00030 (CAR_c00060) gyrA 6364..8943 (+) 2580 WP_013709701.1 DNA gyrase subunit A -
  CAR_RS00035 (CAR_c00070) rpsF 9222..9521 (+) 300 WP_013709702.1 30S ribosomal protein S6 -
  CAR_RS00040 (CAR_c00080) ssb 9570..10094 (+) 525 WP_041556011.1 single-stranded DNA-binding protein Machinery gene
  CAR_RS00045 (CAR_c00090) rpsR 10125..10364 (+) 240 WP_013709704.1 30S ribosomal protein S18 -
  CAR_RS00050 (CAR_c00100) - 10577..12577 (+) 2001 WP_013709705.1 DHH family phosphoesterase -
  CAR_RS00055 (CAR_c00110) rplI 12582..13037 (+) 456 WP_013709706.1 50S ribosomal protein L9 -
  CAR_RS00060 (CAR_c00120) dnaB 13229..14614 (+) 1386 WP_013709707.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 174 a.a.        Molecular weight: 19577.31 Da        Isoelectric Point: 5.2932

>NTDB_id=40349 CAR_RS00040 WP_041556011.1 9570..10094(+) (ssb) [Carnobacterium sp. 17-4]
MINNVVLVGRLTKDADLRYTSNGTAVATFSLAVNRQFTNQKGERDADFINCVIWRKSAESFANFTRKGALVGVEGRIQTR
SYDNQQGQRVYVTEVVVETFSLLESKSKNDQRKDQNDSQAQSGSYGSQQKPYNNNTQSNSQEAPRNQQYQNFGNSDPFEK
SGQPIDISDDDLPF

Nucleotide


Download         Length: 525 bp        

>NTDB_id=40349 CAR_RS00040 WP_041556011.1 9570..10094(+) (ssb) [Carnobacterium sp. 17-4]
GTGATTAACAATGTTGTTTTAGTTGGAAGATTAACAAAAGATGCTGATTTAAGATACACTTCAAATGGCACAGCGGTAGC
AACTTTTTCACTGGCTGTAAACAGACAGTTTACAAACCAAAAAGGTGAAAGAGATGCCGATTTTATCAACTGTGTAATTT
GGAGAAAGAGTGCTGAATCATTTGCAAACTTCACCAGAAAAGGTGCATTAGTAGGTGTAGAAGGCCGTATCCAAACACGT
TCTTATGATAATCAACAAGGGCAACGTGTATATGTTACAGAAGTAGTTGTTGAAACGTTCTCATTATTAGAATCAAAATC
TAAAAATGACCAACGTAAAGATCAAAATGACTCTCAAGCTCAATCGGGATCATACGGTTCTCAACAAAAACCTTATAACA
ATAACACACAAAGTAATTCACAAGAAGCTCCCCGTAACCAACAATATCAAAATTTTGGAAACTCTGATCCTTTTGAAAAG
AGCGGACAACCGATTGATATTTCAGATGACGATTTACCATTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

64.205

100

0.649
  ssbA Bacillus subtilis subsp. subtilis str. 168

56.897

100

0.569
  ssbB Bacillus subtilis subsp. subtilis str. 168

59.259

62.069

0.368

Multiple sequence alignment