Detailed information    

insolico Bioinformatically predicted

Overview


Name   comGG/cglG   Type   Machinery gene
Locus tag   GL183_RS01070 Genome accession   NZ_CP046355
Coordinates   210077..210523 (+) Length   148 a.a.
NCBI ID   WP_001811371.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain 475     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context


Location: 205077..215523
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GL183_RS01030 (GL183_01045) - 205131..206189 (+) 1059 WP_000649471.1 zinc-dependent alcohol dehydrogenase family protein -
  GL183_RS01035 (GL183_01050) - 206340..206705 (+) 366 WP_000286415.1 DUF1033 family protein -
  GL183_RS01040 (GL183_01055) comGA/cglA/cilD 206780..207721 (+) 942 WP_000249555.1 competence type IV pilus ATPase ComGA Machinery gene
  GL183_RS01045 (GL183_01060) comGB/cglB 207669..208685 (+) 1017 WP_074017570.1 competence type IV pilus assembly protein ComGB Machinery gene
  GL183_RS01050 (GL183_01065) comGC/cglC 208687..209013 (+) 327 WP_000738625.1 competence type IV pilus major pilin ComGC Machinery gene
  GL183_RS01055 (GL183_01070) comGD/cglD 209006..209410 (+) 405 WP_000588030.1 competence type IV pilus minor pilin ComGD Machinery gene
  GL183_RS01060 (GL183_01075) comGE/cglE 209373..209675 (+) 303 WP_000413382.1 competence type IV pilus minor pilin ComGE Machinery gene
  GL183_RS01065 (GL183_01080) comGF/cglF 209638..210099 (+) 462 WP_000250539.1 competence type IV pilus minor pilin ComGF Machinery gene
  GL183_RS01070 (GL183_01085) comGG/cglG 210077..210523 (+) 447 WP_001811371.1 competence type IV pilus minor pilin ComGG Machinery gene
  GL183_RS01075 (GL183_01090) - 210626..211213 (+) 588 WP_000679779.1 class I SAM-dependent methyltransferase -
  GL183_RS01080 (GL183_01100) comYH 211274..212227 (+) 954 WP_000345122.1 class I SAM-dependent methyltransferase Machinery gene
  GL183_RS01085 (GL183_01105) - 212278..213468 (+) 1191 WP_000167765.1 acetate kinase -
  GL183_RS11615 - 213469..213600 (+) 132 WP_000768904.1 hypothetical protein -
  GL183_RS01090 (GL183_01110) rnpA 213617..213988 (+) 372 WP_000739247.1 ribonuclease P protein component -
  GL183_RS01095 (GL183_01115) - 213963..214787 (+) 825 WP_000727904.1 membrane protein insertase YidC -

Sequence


Protein


Download         Length: 148 a.a.        Molecular weight: 17229.91 Da        Isoelectric Point: 10.5573

>NTDB_id=403013 GL183_RS01070 WP_001811371.1 210077..210523(+) (comGG/cglG) [Streptococcus pneumoniae strain 475]
MWKKKKVKAGVLLYAVTIAAIFSLLLQFYLNRQIAHYQDYALNKEKLVAFAMAKRTKDKAEQESGEQVFNLGQVSYQNKK
TSLVTTVRTSKSQYEFLFPSVKIKEEKRDKKEEVATDSSEKAEKKNQKRSLKRKRIPSQFNYNALNPE

Nucleotide


Download         Length: 447 bp        

>NTDB_id=403013 GL183_RS01070 WP_001811371.1 210077..210523(+) (comGG/cglG) [Streptococcus pneumoniae strain 475]
GTGTGGAAAAAGAAGAAAGTTAAGGCAGGTGTTCTCCTCTACGCAGTCACCATAGCAGCCATCTTTAGTCTTTTGTTGCA
ATTTTATTTGAACCGACAAATCGCCCACTATCAAGACTATGCTTTAAATAAAGAAAAATTGGTTGCTTTTGCCATGGCTA
AACGAACCAAGGATAAAGCCGAGCAAGAAAGTGGGGAACAGGTTTTTAATCTAGGTCAGGTAAGCTATCAAAACAAGAAA
ACAAGCTTGGTGACGACTGTTCGTACGTCTAAGAGCCAATATGAGTTTCTGTTTCCTTCAGTCAAAATCAAAGAAGAGAA
AAGAGATAAAAAGGAAGAGGTAGCGACCGATTCAAGCGAAAAAGCGGAGAAAAAAAATCAGAAGAGAAGCCTGAAAAGAA
AGAGAATTCCTAGTCAATTCAACTATAATGCGTTGAATCCAGAATAG

Domains



No domain identified.



Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGG/cglG Streptococcus pneumoniae Rx1

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae D39

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae R6

94.872

79.054

0.75

  comGG/cglG Streptococcus pneumoniae TIGR4

94.872

79.054

0.75

  comGG/cglG Streptococcus mitis NCTC 12261

89.344

82.432

0.736

  comGG/cglG Streptococcus mitis SK321

86.066

82.432

0.709


Multiple sequence alignment