Detailed information
Bioinformatically predicted
Overview
| Name | pilR | Type | Regulator |
| Locus tag | PSEBR_RS25900 | Genome accession | NC_015379 |
| Coordinates | 5871417..5872763 (+) | Length | 448 a.a. |
| NCBI ID | WP_003205703.1 | Uniprot ID | F2KLF1 |
| Organism | Pseudomonas brassicacearum subsp. brassicacearum NFM421 | ||
| Function | regulate pilin expression (predicted from homology) Competence regulation |
||
Genomic Context
Location: 5866417..5877763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PSEBR_RS25875 (PSEBR_a4840) | pgeF | 5866630..5867355 (-) | 726 | WP_013694236.1 | peptidoglycan editing factor PgeF | - |
| PSEBR_RS25880 (PSEBR_a4841) | rluD | 5867352..5868314 (-) | 963 | WP_003205696.1 | 23S rRNA pseudouridine(1911/1915/1917) synthase RluD | - |
| PSEBR_RS25885 (PSEBR_a4842) | - | 5868465..5869481 (+) | 1017 | WP_003205698.1 | outer membrane protein assembly factor BamD | - |
| PSEBR_RS25890 (PSEBR_cmegm118) | - | 5869608..5869841 (+) | 234 | WP_013694237.1 | PP0621 family protein | - |
| PSEBR_RS25895 (PSEBR_a4843) | pilS | 5869831..5871420 (+) | 1590 | WP_003205701.1 | two-component system sensor histidine kinase NtrB | Regulator |
| PSEBR_RS25900 (PSEBR_a4844) | pilR | 5871417..5872763 (+) | 1347 | WP_003205703.1 | sigma-54-dependent transcriptional regulator | Regulator |
| PSEBR_RS25905 (PSEBR_a4845) | - | 5872855..5873220 (-) | 366 | WP_003205705.1 | DUF6124 family protein | - |
| PSEBR_RS25915 (PSEBR_a4846) | thiO | 5874437..5875537 (-) | 1101 | WP_003205709.1 | glycine oxidase ThiO | - |
| PSEBR_RS25920 (PSEBR_a4847) | - | 5875593..5875994 (-) | 402 | WP_003205711.1 | type IV pilin protein | - |
Sequence
Protein
Download Length: 448 a.a. Molecular weight: 50084.49 Da Isoelectric Point: 6.2020
>NTDB_id=40280 PSEBR_RS25900 WP_003205703.1 5871417..5872763(+) (pilR) [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIGKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
MNNRSRQRILIVDDEPDIRELLDITLGRMKLDTRSAKNLAEAQALLAGEAFDLCLTDMRLPDGTGLELVQHIQQRYPQLP
VAMITAYGSLETAIDALKAGAFDFLTKPVDLGRLRELVTSALRLPPVATPGTTLERSLLGNSPPMLSVRKQIGKLARSQA
PVYISGESGCGKELVARLIHEQGPRANQRFVPVNCGAIPTELMESEFFGHRKGSFSGAIEDKPGLFQAAHGGTLFLDEVA
DLPLAMQVKLLRAIQEKAVRAVGGQQEEVVDVRILCATHKDLDGEVAAGRFRQDLYYRLNVIELRVPPLRERREDIELLA
NHMLQRLAANTGSPPVRLHPQALDALKNYRFPGNVRELENMLERAYTLCEQQQIEADDLRLAEGNSTTEAGNPDLMQVDN
LEDYLEDVERKLILQALEETRWNRTAAAQRLKLSFRSMRYRLKKLGLD
Nucleotide
Download Length: 1347 bp
>NTDB_id=40280 PSEBR_RS25900 WP_003205703.1 5871417..5872763(+) (pilR) [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCTCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGAGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACGACCC
TCGAGCGCAGCCTGCTGGGTAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGGGAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCTCGTGCCAA
CCAGCGCTTCGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACTTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGACGGCGAAGTGGCTGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCT
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGTCAGATTGCATCCCCAAGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGAGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA
TTGAATAATCGCTCACGGCAACGAATCCTGATCGTCGATGACGAACCGGACATCCGCGAACTCCTGGACATCACCCTGGG
CCGGATGAAACTCGACACCCGCAGCGCCAAGAACCTTGCCGAGGCCCAAGCCCTGCTGGCGGGGGAAGCCTTCGACCTGT
GCCTGACCGACATGCGCCTGCCCGATGGCACCGGCCTGGAACTGGTGCAGCACATCCAGCAACGCTACCCTCAACTGCCC
GTGGCGATGATCACCGCCTATGGCAGCCTGGAAACCGCCATCGACGCCCTCAAGGCCGGCGCCTTCGACTTCCTGACCAA
ACCGGTCGACCTGGGTCGGCTGCGAGAGCTGGTCACCAGTGCCCTGCGCCTGCCGCCGGTCGCCACGCCGGGCACGACCC
TCGAGCGCAGCCTGCTGGGTAACTCGCCACCGATGCTCAGCGTGCGCAAGCAGATCGGGAAACTCGCCCGCAGCCAGGCA
CCGGTGTACATCAGCGGGGAATCGGGCTGCGGCAAGGAACTGGTCGCCCGGCTGATCCACGAACAGGGCCCTCGTGCCAA
CCAGCGCTTCGTACCGGTCAACTGTGGGGCGATTCCCACGGAGCTGATGGAAAGCGAGTTTTTCGGCCATCGAAAAGGCA
GCTTCAGCGGCGCCATCGAGGACAAGCCCGGGCTGTTCCAGGCCGCCCATGGCGGGACCCTGTTCCTCGATGAAGTGGCC
GACTTGCCCTTGGCGATGCAGGTCAAGCTGTTGCGAGCCATCCAGGAAAAAGCCGTGCGCGCCGTTGGCGGCCAACAGGA
AGAAGTGGTGGATGTGCGCATCCTCTGCGCCACCCACAAGGATCTGGACGGCGAAGTGGCTGCCGGGCGCTTTCGCCAGG
ATTTGTATTACCGGCTGAACGTCATCGAACTGCGCGTGCCGCCGTTGCGTGAACGTCGTGAAGACATCGAGCTGCTGGCT
AACCACATGCTCCAGCGCCTGGCGGCCAACACCGGCAGTCCACCGGTCAGATTGCATCCCCAAGCGTTGGACGCTCTCAA
GAATTACCGCTTCCCGGGCAATGTGCGAGAGCTGGAGAACATGCTCGAACGTGCCTACACCCTTTGTGAACAGCAGCAGA
TCGAAGCGGATGACCTGCGCCTGGCCGAGGGCAATAGTACTACTGAGGCAGGCAATCCCGATTTGATGCAGGTCGACAAC
CTGGAGGATTACCTGGAAGACGTTGAGCGCAAGCTCATCCTCCAGGCGTTGGAGGAAACCCGCTGGAACCGCACGGCGGC
GGCGCAGCGGTTGAAGTTGTCGTTTCGGTCGATGCGGTATCGGTTGAAGAAGCTTGGGCTGGATTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilR | Pseudomonas aeruginosa PAK |
79.054 |
99.107 |
0.783 |
| pilR | Acinetobacter baumannii strain A118 |
50.327 |
100 |
0.516 |