Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   SALIVA_RS04220 Genome accession   NC_017595
Coordinates   871555..873756 (+) Length   733 a.a.
NCBI ID   WP_014634314.1    Uniprot ID   -
Organism   Streptococcus salivarius JIM8777     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 866555..878756
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SALIVA_RS04195 (SALIVA_0860) - 867747..868388 (+) 642 WP_014634309.1 cystathionine beta-lyase -
  SALIVA_RS04200 (SALIVA_0861) rnz 868420..869349 (+) 930 WP_014634310.1 ribonuclease Z -
  SALIVA_RS04205 (SALIVA_0862) - 869349..870116 (+) 768 WP_014634311.1 SDR family oxidoreductase -
  SALIVA_RS04210 (SALIVA_0863) - 870128..870838 (+) 711 WP_014634312.1 class I SAM-dependent methyltransferase -
  SALIVA_RS04215 (SALIVA_0864) - 870840..871244 (+) 405 WP_014634313.1 GNAT family N-acetyltransferase -
  SALIVA_RS04220 (SALIVA_0865) recJ 871555..873756 (+) 2202 WP_014634314.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  SALIVA_RS04225 (SALIVA_0866) - 873875..874393 (+) 519 WP_004182660.1 adenine phosphoribosyltransferase -
  SALIVA_RS04230 (SALIVA_0867) metA 874566..875510 (+) 945 WP_014634315.1 homoserine O-succinyltransferase -
  SALIVA_RS04235 (SALIVA_0868) - 875582..876280 (+) 699 WP_014634316.1 DnaD domain-containing protein -
  SALIVA_RS04240 (SALIVA_0869) nth 876280..876924 (+) 645 WP_014634317.1 endonuclease III -
  SALIVA_RS04245 (SALIVA_0870) - 877052..877810 (+) 759 WP_014634318.1 hypothetical protein -

Sequence

Protein


Download         Length: 733 a.a.        Molecular weight: 82196.29 Da        Isoelectric Point: 4.2973

>NTDB_id=40279 SALIVA_RS04220 WP_014634314.1 871555..873756(+) (recJ) [Streptococcus salivarius JIM8777]
MITSTYDWKINTKEPDAGFFKLAKEHGLAETAAKIAYERGVTTEEALEDFLKADLSHLHDPYLLHDMDKAVARIRQAIEN
YEQIIVYGDYDADGMTSASIVKEALEMMGAEARVYLPNRFTDGYGPNESVYKYFIEQEGISLIVTVDNGVAGNEAIAYAQ
EQGVDVIVTDHHSMPAQLPDAYAIVHPEHPDADYPFKYLAGCGVAFKLATALLETIPTEMLDLVAIGTIADMVSLTDENR
IMVKVGLEILKTTERIGLQELLRISDVDPTTISEETVGFKLAPQLNALGRLDDPNPAIELLTGFDDEEAQAIALEINAKN
EERKEVVQKIFDEAMTMVDLDKPVQVLAKEGWHPGVLGIVAGRIMEQISQTVVVLNIEDGLAKGSARSLESINIFHALDD
HRDIFTAFGGHAGAAGMTLPEENLGQLSDILCNYVYDNDIDTSTKNTLNLDEELQLSELSLDTIKSLEKLAPFGMDNKKP
VFWLHDITVTQARTMGQNGAHLKFKVKQGKDSFDVVAFNKGNLLQEFQQAQGLELAVTLSVNVWNGQTTLQLMLEDARVD
GVQLFDFRSKNMSLPEGLPSVEEAADTEPAVVLNTLPESATELKEWFEGKDFQAIYFKNSIKEAYYLTGYGTREQFARLY
KTIYQFPEFDVRYKLDELSHYLKIDKILLIKMIQIFDELDFVTIDNGVMTVNKEAEKREIEDSQIFQDLKRLVKFQELMA
LGTPQEIYDWLYK

Nucleotide


Download         Length: 2202 bp        

>NTDB_id=40279 SALIVA_RS04220 WP_014634314.1 871555..873756(+) (recJ) [Streptococcus salivarius JIM8777]
ATGATTACATCAACGTATGATTGGAAAATAAACACAAAAGAGCCAGATGCTGGCTTTTTTAAACTTGCCAAAGAACATGG
GCTGGCAGAAACAGCAGCCAAGATTGCCTATGAACGTGGCGTGACGACAGAAGAAGCCCTTGAAGACTTTCTTAAGGCTG
ATCTATCACATCTTCATGACCCTTATCTTCTTCATGATATGGACAAGGCAGTGGCTAGGATTCGTCAGGCCATTGAAAAT
TACGAGCAAATCATAGTCTATGGAGACTATGATGCGGATGGGATGACATCAGCATCGATTGTCAAGGAAGCCCTTGAAAT
GATGGGCGCTGAGGCTCGAGTCTATTTGCCTAACCGTTTTACAGATGGTTATGGCCCAAACGAAAGTGTCTACAAGTATT
TCATTGAGCAGGAAGGCATTTCACTCATTGTTACAGTGGATAATGGAGTAGCGGGTAATGAAGCTATTGCTTATGCGCAA
GAGCAAGGTGTGGACGTTATCGTTACAGACCACCATAGTATGCCGGCACAGCTTCCAGATGCCTATGCCATTGTCCATCC
AGAGCATCCAGATGCTGATTATCCATTTAAGTATTTGGCAGGTTGTGGTGTAGCTTTCAAATTGGCAACTGCCCTCCTTG
AAACTATTCCTACAGAGATGTTGGACTTGGTAGCCATTGGTACCATTGCTGATATGGTTAGCCTAACGGATGAAAATCGT
ATTATGGTAAAGGTCGGGCTGGAAATTCTCAAGACTACTGAGCGTATTGGGCTTCAAGAATTGCTCCGCATTTCAGATGT
GGACCCAACAACAATTTCCGAAGAAACGGTAGGTTTCAAACTGGCTCCTCAACTCAATGCCTTGGGACGCTTAGATGATC
CAAATCCAGCCATTGAACTACTGACCGGGTTTGACGATGAGGAAGCTCAAGCCATTGCTCTGGAAATCAATGCTAAAAAT
GAAGAACGTAAGGAAGTTGTTCAAAAAATCTTTGACGAAGCTATGACCATGGTAGACTTGGACAAACCAGTTCAAGTTTT
AGCCAAGGAAGGTTGGCATCCTGGCGTTCTAGGTATTGTGGCTGGGCGCATCATGGAGCAAATCAGCCAGACAGTAGTGG
TTTTGAATATTGAAGATGGCTTGGCAAAGGGTTCAGCCCGTAGTTTGGAATCTATCAATATCTTCCATGCCCTTGATGAC
CACCGAGACATCTTTACTGCTTTTGGAGGACATGCTGGAGCGGCTGGGATGACCCTTCCGGAGGAAAATCTTGGTCAACT
CTCAGATATTTTGTGCAATTATGTCTATGACAATGACATCGATACAAGCACTAAAAATACACTTAATTTAGACGAGGAGC
TTCAACTCAGCGAGCTTAGCTTGGATACCATTAAGAGCCTTGAAAAACTAGCACCTTTTGGTATGGATAATAAAAAGCCA
GTCTTTTGGCTACATGATATTACCGTTACTCAAGCTAGGACAATGGGACAAAATGGAGCCCATCTTAAGTTTAAGGTGAA
GCAAGGCAAGGATAGCTTTGACGTTGTCGCTTTTAATAAAGGTAATCTGCTTCAAGAATTTCAACAAGCTCAAGGTTTGG
AATTGGCAGTGACCTTGTCTGTTAATGTTTGGAATGGACAGACAACGCTACAGCTCATGCTAGAAGATGCGCGTGTGGAT
GGTGTTCAATTATTTGATTTTCGATCAAAAAACATGTCACTGCCTGAAGGTCTACCATCGGTAGAAGAAGCAGCAGACAC
AGAGCCTGCGGTTGTCCTCAACACCCTACCTGAATCAGCGACAGAATTAAAAGAGTGGTTTGAAGGTAAAGATTTTCAGG
CTATCTATTTTAAAAATAGCATTAAGGAAGCCTATTATCTGACAGGTTATGGAACAAGAGAGCAATTTGCAAGGCTCTAT
AAAACCATTTATCAATTCCCAGAATTCGATGTCCGCTATAAACTGGATGAACTCAGTCATTACCTTAAAATCGACAAGAT
TCTCCTGATTAAGATGATTCAAATCTTTGATGAATTGGATTTTGTGACTATTGATAATGGTGTTATGACAGTCAATAAAG
AAGCTGAAAAACGTGAGATTGAGGACAGTCAGATTTTCCAAGATCTGAAACGACTCGTTAAGTTCCAAGAACTTATGGCT
TTGGGAACACCACAGGAAATTTATGACTGGCTTTATAAGTAG

Domains

Predicted by InterProScan.

DHHA1 domain (DHHA1)

(317-430)

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(583-731)

RecJ OB domain (RecJ_OB)

(451-556)

DHH family (DHH)

(83-228)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Streptococcus pneumoniae strain D39V

67.935

100

0.682
  recJ Bacillus subtilis subsp. subtilis str. 168

38.175

100

0.405

Multiple sequence alignment