Detailed information NTG0040273

Bioinformatically predicted

Overview

• Name: comA
• Type: Machinery gene
• Locus tag: PSEBR_RS21815
• Genome accession: NC_015379
• Coordinates: 4980874..4983120 (-)
• Length: 748 a.a.
• NCBI ID: WP_013694003.1
• Uniprot ID: -
• Organism: Pseudomonas brassicacearum subsp. brassicacearum NFM421
• Function: ssDNA transport through the inner membrane (predicted from homology) DNA binding and uptake

Genomic Context

Location: 4975874..4988120

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PSEBR_RS21780 (PSEBR_a4064)	murB	4976257..4977276 (-)	1020	WP_003204282.1	UDP-N-acetylmuramate dehydrogenase	-
PSEBR_RS21785 (PSEBR_a4065)	-	4977273..4977737 (-)	465	WP_013694001.1	low molecular weight protein-tyrosine-phosphatase	-
PSEBR_RS21790 (PSEBR_a4066)	kdsB	4977737..4978501 (-)	765	WP_003204286.1	3-deoxy-manno-octulosonate cytidylyltransferase	-
PSEBR_RS21795 (PSEBR_a4067)	-	4978498..4978683 (-)	186	WP_003179363.1	Trm112 family protein	-
PSEBR_RS21800 (PSEBR_a4068)	lpxK	4978707..4979717 (-)	1011	WP_003204290.1	tetraacyldisaccharide 4'-kinase	-
PSEBR_RS21805 (PSEBR_a4069)	-	4979717..4980145 (-)	429	WP_013694002.1	ExbD/TolR family protein	-
PSEBR_RS21810 (PSEBR_a4070)	exbB	4980142..4980777 (-)	636	WP_003204294.1	MotA/TolQ/ExbB proton channel family protein	Machinery gene
PSEBR_RS21815 (PSEBR_a4071)	comA	4980874..4983120 (-)	2247	WP_013694003.1	DNA internalization-related competence protein ComEC/Rec2	Machinery gene
PSEBR_RS21820 (PSEBR_a4072)	-	4983265..4983780 (+)	516	WP_003204298.1	DUF2062 domain-containing protein	-
PSEBR_RS21825 (PSEBR_a4073)	-	4983867..4984646 (-)	780	WP_003204300.1	ABC transporter permease	-
PSEBR_RS21830 (PSEBR_a4074)	-	4984649..4985581 (-)	933	WP_003204301.1	ABC transporter ATP-binding protein	-
PSEBR_RS21835 (PSEBR_a4075)	-	4985718..4986341 (-)	624	WP_003204303.1	glutathione S-transferase family protein	-
PSEBR_RS21840 (PSEBR_a4076)	-	4986387..4987046 (-)	660	WP_013694005.1	transglutaminase-like domain-containing protein	-

Sequence

Protein

• Length: 748 a.a.
• Molecular weight: 81013.38 Da
• Isoelectric Point: 9.6855

>NTDB_id=40273 PSEBR_RS21815 WP_013694003.1 4980874..4983120(-) (comA) [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
MRTGLVALALGLLAPIFLPALPPIWLITAMPVLALMVLPFRTYPLGFFLFGLAWACLSAQCALDDRLPIALDGETRWVEG
RVIGLPQQGEGVMRFELADVHSRRTRLPTAMRLAWFGGPPVNSGERWRLAVKLKRPSGLLNPHGFDYAAWLLSRGIGATG
TIKDGHLLQAARGAWRDEVRQALAQVDAHGRSGALAALVLGDGGGLSREDWQVLQDTGTVHLLVISGQHIGLLAGLVYLL
VAGAARYGLWPVGLAWLPWACGLAFCAALGYGLLAGFEVPVRRACAMIGLVLLWRLRFKQPDPWWAWLLAFVGVLVFDPL
ASLRPGFWLSFAAVAILMFTFGARLGPWRWWQTWTRAQWLVALGLCPLLLIVGLPVSLSGPLVNLLAVPWISLLVLPLAL
LGTALLPVPLMGEGLLWIAGGLLDLLFKGLALVAGRMPAWVPAAVPPWALGIAAFGAFLLLLPKGVPLRVLGWPMVLLMV
FPPQEHLPQGHAEIWQLDVGQGLAVLVRTRRHALLYDAGPRFGEADAGERVVLPTLRKLGVRRLDLMLLSHADADHAGGA
RAVRNGLPTLEVISGDPDALPAELLAGPCDSGRRWEWDGVGFELWRWASAVESNQKSCVLLVEAGGERLLLTGDIDTPAE
RALLDEALAVPIQWLAAPHHGSRSSSSMALLSRLKPHSVLISRGQGNAFGHPHPQVMARYRRSGLAIYDSAEQGAIRLLL
GAFGVPRTEAGHRRYWRDPPAVGPPGQY

Nucleotide

• Length: 2247 bp

>NTDB_id=40273 PSEBR_RS21815 WP_013694003.1 4980874..4983120(-) (comA) [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
ATGCGCACAGGGTTAGTCGCGCTTGCACTGGGGCTGTTGGCCCCGATTTTTTTGCCGGCACTGCCGCCGATATGGCTGAT
TACAGCCATGCCGGTGCTGGCGCTGATGGTGTTGCCGTTTCGAACCTACCCGCTGGGTTTTTTCCTGTTCGGGCTGGCCT
GGGCCTGCCTGTCGGCGCAGTGTGCGCTGGATGACCGGTTACCCATCGCGCTCGACGGCGAAACCCGCTGGGTCGAGGGT
CGAGTGATCGGTTTGCCGCAACAGGGCGAAGGCGTGATGCGCTTCGAACTGGCCGATGTCCATTCACGCCGTACCCGTCT
ACCGACGGCGATGCGTCTCGCCTGGTTCGGTGGTCCGCCGGTCAACAGCGGCGAACGATGGCGATTGGCGGTGAAACTCA
AGCGGCCCAGTGGGCTGCTGAACCCGCACGGCTTCGACTATGCCGCCTGGTTGCTGAGCCGCGGCATCGGCGCGACCGGT
ACCATCAAGGATGGCCATCTCCTGCAAGCGGCCCGGGGGGCCTGGCGTGACGAGGTGCGCCAGGCCCTGGCACAGGTCGA
TGCCCACGGCCGCTCCGGTGCGCTGGCGGCTCTGGTGCTGGGCGACGGCGGCGGGCTGAGTCGCGAGGATTGGCAGGTGC
TGCAAGACACCGGCACCGTCCACTTGCTGGTGATCTCCGGGCAACACATCGGCCTGCTCGCCGGCCTGGTGTACCTGTTG
GTGGCCGGCGCGGCGCGTTATGGTCTTTGGCCGGTGGGTCTGGCCTGGTTGCCTTGGGCCTGTGGGCTGGCCTTCTGTGC
CGCCCTGGGCTACGGCTTGCTCGCCGGCTTCGAGGTGCCGGTGCGGCGGGCCTGCGCGATGATCGGCCTGGTGCTGCTGT
GGCGCTTGCGTTTCAAACAGCCAGATCCGTGGTGGGCATGGCTGCTGGCCTTCGTCGGGGTGCTGGTGTTCGACCCGCTT
GCCAGCTTGCGGCCGGGGTTCTGGTTGTCGTTTGCGGCCGTGGCCATATTGATGTTCACCTTTGGCGCTCGCCTGGGGCC
TTGGCGCTGGTGGCAAACCTGGACCCGTGCCCAGTGGCTGGTCGCGCTCGGCCTGTGTCCGTTGTTGTTGATCGTGGGTT
TGCCGGTCAGCCTCAGCGGGCCGTTGGTGAACCTGCTCGCGGTGCCCTGGATCAGCCTGTTGGTATTGCCGCTGGCGCTG
CTTGGCACGGCATTGTTGCCGGTGCCGCTCATGGGCGAAGGCCTGCTGTGGATTGCCGGTGGGCTGCTCGATCTGCTGTT
CAAGGGGCTGGCACTGGTTGCCGGACGAATGCCGGCCTGGGTTCCTGCCGCAGTCCCGCCCTGGGCCTTGGGCATCGCCG
CCTTCGGTGCTTTTTTGCTGCTGTTGCCCAAAGGTGTGCCGCTACGTGTACTGGGGTGGCCGATGGTGTTGCTGATGGTT
TTTCCACCGCAAGAACACCTGCCGCAAGGGCACGCCGAGATCTGGCAACTGGACGTGGGCCAAGGGCTGGCGGTGCTGGT
GCGGACCCGGCGGCACGCCCTGCTTTACGACGCCGGGCCGCGCTTTGGCGAGGCTGACGCGGGCGAGCGGGTCGTCCTGC
CGACCTTGCGCAAACTGGGTGTGCGCCGCTTGGACCTGATGTTGCTCAGCCATGCCGACGCCGATCACGCTGGCGGTGCC
CGCGCCGTGCGCAATGGGCTGCCGACGCTGGAAGTGATCAGCGGCGATCCAGACGCGCTGCCCGCCGAGCTGCTGGCCGG
GCCTTGCGACAGTGGCAGGCGCTGGGAATGGGATGGGGTCGGGTTCGAACTGTGGCGGTGGGCCTCTGCCGTCGAGAGCA
ACCAGAAGTCCTGCGTCTTGCTGGTGGAGGCCGGCGGTGAACGCCTGCTGCTGACCGGCGATATCGACACCCCTGCCGAG
CGCGCCTTGCTCGACGAGGCCCTGGCCGTGCCGATCCAGTGGCTGGCCGCGCCGCATCACGGCAGTCGCAGTTCGTCGTC
GATGGCGTTGCTGTCGCGTCTCAAGCCGCATTCGGTATTGATCTCTCGAGGGCAGGGCAATGCGTTCGGCCACCCTCATC
CCCAGGTGATGGCCCGGTATCGGCGCTCAGGCCTGGCGATCTACGACAGTGCCGAGCAGGGCGCCATTCGTCTGCTACTG
GGGGCTTTCGGGGTGCCGCGCACCGAGGCCGGGCACCGCCGTTATTGGCGTGATCCGCCAGCCGTCGGGCCACCGGGGCA
ATATTGA

Domains

Predicted by InterproScan.

• Domain of unknown function (DUF4131) (DUF4131) (23-165)

• Metallo-beta-lactamase superfamily (Lactamase_B) (498-676)

• Competence protein (Competence) (198-464)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
comA	Pseudomonas stutzeri DSM 10701	61.732	95.722	0.591
comA	Ralstonia pseudosolanacearum GMI1000	32.038	100	0.364