Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PSEBR_RS21810 Genome accession   NC_015379
Coordinates   4980142..4980777 (-) Length   211 a.a.
NCBI ID   WP_003204294.1    Uniprot ID   -
Organism   Pseudomonas brassicacearum subsp. brassicacearum NFM421     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 4975142..4985777
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PSEBR_RS21775 (PSEBR_a4063) - 4975521..4975991 (-) 471 WP_003204280.1 (2Fe-2S)-binding protein -
  PSEBR_RS21780 (PSEBR_a4064) murB 4976257..4977276 (-) 1020 WP_003204282.1 UDP-N-acetylmuramate dehydrogenase -
  PSEBR_RS21785 (PSEBR_a4065) - 4977273..4977737 (-) 465 WP_013694001.1 low molecular weight protein-tyrosine-phosphatase -
  PSEBR_RS21790 (PSEBR_a4066) kdsB 4977737..4978501 (-) 765 WP_003204286.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PSEBR_RS21795 (PSEBR_a4067) - 4978498..4978683 (-) 186 WP_003179363.1 Trm112 family protein -
  PSEBR_RS21800 (PSEBR_a4068) lpxK 4978707..4979717 (-) 1011 WP_003204290.1 tetraacyldisaccharide 4'-kinase -
  PSEBR_RS21805 (PSEBR_a4069) - 4979717..4980145 (-) 429 WP_013694002.1 ExbD/TolR family protein -
  PSEBR_RS21810 (PSEBR_a4070) exbB 4980142..4980777 (-) 636 WP_003204294.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PSEBR_RS21815 (PSEBR_a4071) comA 4980874..4983120 (-) 2247 WP_013694003.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PSEBR_RS21820 (PSEBR_a4072) - 4983265..4983780 (+) 516 WP_003204298.1 DUF2062 domain-containing protein -
  PSEBR_RS21825 (PSEBR_a4073) - 4983867..4984646 (-) 780 WP_003204300.1 ABC transporter permease -
  PSEBR_RS21830 (PSEBR_a4074) - 4984649..4985581 (-) 933 WP_003204301.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22842.95 Da        Isoelectric Point: 8.0840

>NTDB_id=40272 PSEBR_RS21810 WP_003204294.1 4980142..4980777(-) (exbB) [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
MWELVKSGGWMMLPIILSSIAALGIVAERLWTLRASRVTPEHLLGQVWVWIKDKQLNKDKLKELRASSPLGEVLAAGLAN
SKHGREIMKECIEEAAARVIHELERYINTLGTIAAMSPLLGLLGTVLGMIDIFSAFTGSGMTTNAAVLAGGISKALITTA
AGLMVGIPSVFFHRFLQRRVDELVVGMEQEAIKLVEVVQGDRDVDLAGGKK

Nucleotide


Download         Length: 636 bp        

>NTDB_id=40272 PSEBR_RS21810 WP_003204294.1 4980142..4980777(-) (exbB) [Pseudomonas brassicacearum subsp. brassicacearum NFM421]
GTGTGGGAATTGGTCAAATCCGGCGGCTGGATGATGTTGCCGATCATTCTGAGTTCCATCGCGGCACTGGGTATCGTTGC
CGAACGCCTGTGGACCCTGCGGGCCAGCCGCGTGACCCCGGAGCATCTGCTCGGGCAGGTCTGGGTCTGGATCAAGGACA
AGCAGCTGAACAAGGACAAGCTCAAGGAGCTGCGAGCCAGTTCGCCCTTGGGGGAAGTCCTCGCCGCCGGCCTGGCGAAC
TCCAAGCATGGTCGCGAGATCATGAAGGAGTGCATCGAGGAAGCCGCCGCCCGGGTCATCCATGAACTGGAGCGCTACAT
CAATACCCTGGGCACCATCGCCGCCATGTCCCCGCTGCTGGGCCTGCTGGGTACGGTGCTGGGCATGATCGACATCTTCA
GTGCGTTCACCGGCTCCGGCATGACCACTAACGCCGCGGTGCTGGCGGGGGGGATCTCCAAGGCTTTGATCACCACCGCT
GCTGGCCTGATGGTCGGTATCCCTTCGGTGTTCTTCCACAGGTTCCTGCAACGCCGCGTCGACGAGTTGGTGGTGGGCAT
GGAGCAGGAAGCCATCAAGCTGGTCGAGGTGGTGCAGGGGGACCGTGACGTGGACCTGGCTGGGGGCAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(67-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

84.762

99.526

0.844

Multiple sequence alignment