Detailed information    

insolico Bioinformatically predicted

Overview


Name   micB   Type   Regulator
Locus tag   FOB91_RS10645 Genome accession   NZ_CP046328
Coordinates   2189192..2190553 (+) Length   453 a.a.
NCBI ID   WP_008809003.1    Uniprot ID   -
Organism   Streptococcus gordonii strain FDAARGOS_683     
Function   repress competence development (predicted from homology)   
Competence regulation

Genomic Context


Location: 2184192..2195553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOB91_RS10620 (FOB91_10620) - 2185190..2185552 (+) 363 WP_012000238.1 hypothetical protein -
  FOB91_RS10765 (FOB91_10630) - 2185886..2186257 (+) 372 WP_012000239.1 hypothetical protein -
  FOB91_RS10635 (FOB91_10635) thrS 2186349..2188292 (+) 1944 WP_012000240.1 threonine--tRNA ligase -
  FOB91_RS10640 (FOB91_10640) micA 2188498..2189199 (+) 702 WP_012000241.1 response regulator YycF Regulator
  FOB91_RS10645 (FOB91_10645) micB 2189192..2190553 (+) 1362 WP_008809003.1 cell wall metabolism sensor histidine kinase VicK Regulator
  FOB91_RS10650 (FOB91_10650) vicX 2190546..2191349 (+) 804 WP_008809002.1 MBL fold metallo-hydrolase Regulator
  FOB91_RS10655 (FOB91_10655) - 2191384..2191740 (+) 357 WP_008809001.1 YbaN family protein -
  FOB91_RS10660 (FOB91_10660) rnc 2191983..2192681 (+) 699 WP_012000242.1 ribonuclease III -

Sequence


Protein


Download         Length: 453 a.a.        Molecular weight: 51641.69 Da        Isoelectric Point: 4.3991

>NTDB_id=402726 FOB91_RS10645 WP_008809003.1 2189192..2190553(+) (micB) [Streptococcus gordonii strain FDAARGOS_683]
MIENIRQFVFSVDFVFVLIVLGFILVVALLFLENRRDNRQLRLLNQKIKDLIAGDYSEVLDMQGSPEITDMTNSINDLSE
VTRLTQENLEQETKRLTSILSYMTDGVLATNRRGQIIMINDMASKQLGVDPEEVQNTSILDLLDIADEYDLRDLITKMPE
LTIDSQDENGEYLSLRVRFALVRRESGFISGLVAVLHDTTEQEKEERERRLFVSNVSHELRTPLTSVKSYLEALDEGALS
EPVAPEFVKVSLTETNRMMRMVSDLLSLSRIDNDSSHLDVELTNFTAFITFILNRFDKIKSQDETKKYEIVRDYPITPIW
VEIDTDKMTQVIDNIMNNAIKYSPDGGKITVGMKTTEDQLIISISDEGLGIPKKDLPKIFDRFYRVDKARSRAQGGTGLG
LAIAKEIIKQHHGFIWAKSEYEVGSTFTIVLPYDKDAVLDDGWESEEVESKDD

Nucleotide


Download         Length: 1362 bp        

>NTDB_id=402726 FOB91_RS10645 WP_008809003.1 2189192..2190553(+) (micB) [Streptococcus gordonii strain FDAARGOS_683]
ATGATTGAAAATATTAGACAATTTGTGTTTTCTGTAGATTTTGTTTTTGTTTTAATTGTTTTAGGTTTTATTTTGGTTGT
TGCCCTGCTCTTTTTAGAGAATCGAAGGGATAATCGCCAACTTCGTCTGCTCAATCAAAAGATCAAAGATTTAATCGCAG
GAGACTATTCCGAGGTTCTGGATATGCAGGGCAGTCCAGAAATTACGGATATGACCAATAGTATAAATGATTTGTCTGAG
GTGACTAGATTAACACAAGAAAATCTGGAGCAAGAAACCAAACGTTTGACTAGTATCCTGTCCTACATGACAGATGGGGT
TTTGGCAACCAATCGTAGGGGCCAGATTATCATGATTAATGATATGGCTTCTAAGCAATTAGGTGTTGATCCAGAGGAAG
TCCAAAATACAAGTATTTTAGACTTGTTAGATATTGCGGATGAATATGATCTGCGAGATTTAATTACCAAGATGCCGGAG
TTGACGATTGATTCACAGGATGAAAATGGAGAATATTTAAGTCTGCGTGTTCGTTTTGCCTTGGTTCGTAGGGAATCTGG
TTTTATCTCTGGTTTGGTAGCTGTTCTGCACGATACGACGGAACAGGAAAAAGAGGAGCGGGAACGTCGACTTTTTGTAT
CAAATGTTAGTCATGAGCTCCGTACCCCTTTGACAAGTGTTAAGTCTTACCTAGAAGCTTTGGATGAGGGCGCTCTTTCT
GAGCCAGTTGCACCTGAATTTGTTAAAGTTTCTCTTACTGAAACGAACCGAATGATGCGGATGGTTTCTGATTTGCTTAG
CTTATCAAGGATTGATAATGATAGTAGTCATTTGGATGTAGAATTAACTAATTTTACAGCTTTTATCACTTTTATTTTGA
ATCGTTTTGATAAGATTAAAAGTCAGGATGAAACCAAAAAATATGAGATTGTACGAGATTATCCAATCACACCTATTTGG
GTTGAAATTGATACTGATAAAATGACGCAGGTCATTGATAATATCATGAATAATGCTATCAAGTATTCTCCAGATGGTGG
AAAGATTACCGTAGGGATGAAAACGACGGAAGATCAGCTGATTATTTCAATTTCTGATGAAGGATTGGGAATTCCCAAAA
AAGACTTGCCTAAGATCTTTGACCGTTTTTATCGAGTGGATAAGGCTCGAAGCCGTGCGCAAGGTGGAACGGGCTTAGGA
CTTGCGATTGCAAAAGAAATCATCAAGCAGCACCATGGCTTTATCTGGGCCAAGAGTGAGTATGAAGTCGGATCAACTTT
TACAATTGTCCTGCCGTATGATAAGGATGCTGTTTTGGATGATGGCTGGGAAAGTGAAGAAGTAGAAAGTAAAGATGACT
AA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  micB Streptococcus pneumoniae Cp1015

80.822

96.689

0.781

  vicK Streptococcus mutans UA159

70.316

90.728

0.638


Multiple sequence alignment