Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOC54_RS00985 Genome accession   NZ_CP046306
Coordinates   140908..141780 (-) Length   290 a.a.
NCBI ID   WP_002448769.1    Uniprot ID   -
Organism   Staphylococcus hominis strain FDAARGOS_746     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 135908..146780
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC54_RS00970 (FOC54_00970) xerC 136368..137231 (-) 864 WP_414485968.1 tyrosine recombinase XerC -
  FOC54_RS00975 (FOC54_00975) trmFO 137367..138674 (-) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FOC54_RS00980 (FOC54_00980) topA 138699..140768 (-) 2070 WP_049418187.1 type I DNA topoisomerase -
  FOC54_RS00985 (FOC54_00985) dprA 140908..141780 (-) 873 WP_002448769.1 DNA-processing protein DprA Machinery gene
  FOC54_RS00990 (FOC54_00990) sucD 142038..142943 (-) 906 WP_002448725.1 succinate--CoA ligase subunit alpha -
  FOC54_RS00995 (FOC54_00995) sucC 142965..144131 (-) 1167 WP_071859448.1 ADP-forming succinate--CoA ligase subunit beta -
  FOC54_RS01000 (FOC54_01000) - 144259..145026 (-) 768 WP_071859449.1 ribonuclease HII -
  FOC54_RS01005 (FOC54_01005) ylqF 145010..145894 (-) 885 WP_049336491.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33521.62 Da        Isoelectric Point: 8.2454

>NTDB_id=402463 FOC54_RS00985 WP_002448769.1 140908..141780(-) (dprA) [Staphylococcus hominis strain FDAARGOS_746]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYCFLND

Nucleotide


Download         Length: 873 bp        

>NTDB_id=402463 FOC54_RS00985 WP_002448769.1 140908..141780(-) (dprA) [Staphylococcus hominis strain FDAARGOS_746]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGGGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATTGTTTTTTAAACGATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.77

100

0.369

Multiple sequence alignment