Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   FOC55_RS02320 Genome accession   NZ_CP046301
Coordinates   479428..480300 (-) Length   290 a.a.
NCBI ID   WP_002455422.1    Uniprot ID   A0A974L0C4
Organism   Staphylococcus hominis strain FDAARGOS_747     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 474428..485300
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  FOC55_RS02305 (FOC55_02305) xerC 474889..475782 (-) 894 WP_002448815.1 tyrosine recombinase XerC -
  FOC55_RS02310 (FOC55_02310) trmFO 475888..477195 (-) 1308 WP_002448834.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  FOC55_RS02315 (FOC55_02315) topA 477220..479289 (-) 2070 WP_065581244.1 type I DNA topoisomerase -
  FOC55_RS02320 (FOC55_02320) dprA 479428..480300 (-) 873 WP_002455422.1 DNA-processing protein DprA Machinery gene
  FOC55_RS02325 (FOC55_02325) sucD 480558..481463 (-) 906 WP_002448725.1 succinate--CoA ligase subunit alpha -
  FOC55_RS02330 (FOC55_02330) sucC 481485..482651 (-) 1167 WP_065581243.1 ADP-forming succinate--CoA ligase subunit beta -
  FOC55_RS02335 (FOC55_02335) - 482779..483546 (-) 768 WP_065581242.1 ribonuclease HII -
  FOC55_RS02340 (FOC55_02340) ylqF 483530..484414 (-) 885 WP_049336491.1 ribosome biogenesis GTPase YlqF -

Sequence

Protein


Download         Length: 290 a.a.        Molecular weight: 33573.69 Da        Isoelectric Point: 8.9933

>NTDB_id=402440 FOC55_RS02320 WP_002455422.1 479428..480300(-) (dprA) [Staphylococcus hominis strain FDAARGOS_747]
MNDFILLKMRWIGYTTQHIHHLLNVFPKFFNVNEHVQFEMINEWESLYLKKKRFTQLEEISYDYIQTQLSRSQVNYVTSF
SSQYPPLLKTIYDYPFILFYRGNIHLLSSTYTLGVVGSREATHYSKCALDYLFPHFINIPLTIVSGLAKGADSIAHQFAL
KHHLPTIAVLGFGHLNHYPKETRKLRNIIEETGLVISEYPPLTKINKYQFPERNRLISGLSRGVLITEAKIKSGSQITID
CALDQNRNVYVLPGSMFNPLTKGNLLRAQEGAMIVSEAEDILYDYRFLNN

Nucleotide


Download         Length: 873 bp        

>NTDB_id=402440 FOC55_RS02320 WP_002455422.1 479428..480300(-) (dprA) [Staphylococcus hominis strain FDAARGOS_747]
ATGAATGATTTTATTTTATTAAAAATGAGATGGATAGGGTATACGACCCAACATATTCATCATTTACTCAATGTATTTCC
AAAATTTTTCAATGTTAATGAACATGTTCAATTTGAAATGATTAATGAATGGGAATCTCTATATTTAAAAAAGAAGCGTT
TTACTCAATTAGAAGAGATTTCTTACGATTACATTCAAACTCAACTTTCTAGATCTCAGGTTAACTATGTTACTTCATTT
TCTTCTCAATATCCTCCATTGCTTAAAACTATTTACGACTATCCTTTTATATTATTTTATCGTGGAAATATACATTTATT
ATCATCTACATATACTTTAGGTGTTGTAGGTTCACGTGAGGCCACACATTATTCTAAGTGTGCACTAGATTATCTATTTC
CTCACTTTATAAATATTCCACTAACGATTGTATCCGGTTTAGCGAAAGGTGCTGATAGCATAGCTCATCAATTCGCATTA
AAACATCATCTCCCAACTATTGCAGTTCTAGGTTTTGGTCATTTAAATCACTATCCAAAGGAAACCCGAAAGTTACGTAA
TATAATTGAAGAAACTGGTTTAGTCATAAGTGAATATCCTCCTTTAACAAAAATAAACAAATATCAATTCCCTGAAAGAA
ATCGTCTGATAAGCGGGTTGTCTCGTGGTGTATTAATTACTGAAGCTAAAATTAAAAGTGGTAGTCAAATTACAATAGAT
TGTGCTTTAGATCAAAATAGAAATGTTTATGTATTACCTGGATCAATGTTTAACCCTTTGACAAAAGGAAATTTATTACG
TGCTCAAGAAGGTGCAATGATTGTTTCAGAAGCAGAAGATATATTATATGATTATCGTTTTTTAAACAATTAA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(69-276)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Staphylococcus aureus MW2

53.979

99.655

0.538
  dprA Staphylococcus aureus N315

53.819

99.31

0.534
  dprA Streptococcus mutans UA159

36.77

100

0.369

Multiple sequence alignment