Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiA   Type   Regulator
Locus tag   SOR_RS03235 Genome accession   NC_015291
Coordinates   625589..627547 (+) Length   652 a.a.
NCBI ID   WP_000748541.1    Uniprot ID   F2QCF5
Organism   Streptococcus oralis Uo5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 620589..632547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SOR_RS03210 (SOR_0656) - 620733..621245 (+) 513 WP_000892228.1 YiiX/YebB-like N1pC/P60 family cysteine hydrolase -
  SOR_RS03215 (SOR_0657) - 621229..621879 (+) 651 WP_000614489.1 DUF1803 domain-containing protein -
  SOR_RS03220 (SOR_0658) - 621981..622181 (+) 201 WP_000051179.1 CsbD family protein -
  SOR_RS03225 (SOR_0659) - 622213..623658 (-) 1446 WP_000590281.1 UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase -
  SOR_RS03230 (SOR_0660) - 623764..625386 (+) 1623 WP_000064192.1 polysaccharide biosynthesis protein -
  SOR_RS03235 (SOR_0661) amiA 625589..627547 (+) 1959 WP_000748541.1 peptide ABC transporter substrate-binding protein Regulator
  SOR_RS03240 (SOR_0662) - 627693..628787 (+) 1095 WP_000031979.1 cystathionine gamma-synthase -
  SOR_RS03245 (SOR_0663) - 628795..629961 (+) 1167 WP_000521349.1 MalY/PatB family protein -

Sequence

Protein


Download         Length: 652 a.a.        Molecular weight: 72775.94 Da        Isoelectric Point: 4.6968

>NTDB_id=40191 SOR_RS03235 WP_000748541.1 625589..627547(+) (amiA) [Streptococcus oralis Uo5]
MKKSKAKYLTLASVVLSAGILLSACGNSSSASKTYNYVYSSDPSSLNYLAENRATTTDIVTNLVDGLMENDQYGNYVPSL
AEDWTVSQDGLTYTYKLRKDAKWYTYEGEEYAPVTAQDFVTGLKYAADKKSEALYLVQDSVAGLDDYINGKTTDFSTVGV
KAIDDQTVQYTLTRPEPYWNSKTTSTILFPVNADFLKSKGDDFGKVDPSSILYSGPFLMKSFVSKSVIEYKKNPNYWDAK
NVFVDDVKLTYYDGSDQDALARNFVEGVYSYALLYPNSSSFEGIKEKNKDNIIYSMQNATSYYLNFNLDRKSYNFTSKSS
DIEKKSTQEAVLNKNFRQAFNYAYNRTAYGAQSQGEDGATKIIRNLVVPPTFVSINGKDFGDVVSEKMVNYGQEWQGINF
ADAQDPYYNPDKAKAKFAEAKKELEAKGVQFPIHLDVTVDQSAKKGVLEASSLKQSIESVLGAENVVIDIQQLSTDDFDN
SSYLAQTAAQKDFDIYNGGWSADYLDPSSYLDILNVNNGGILQNIGLEPGEVNDKAKAVGLDTYTQMLEEANKEQEPAKR
YEKYAEIQAWLVDSALAIPNVSQGGTPTLRKTVPFSSPFSQAGNKGVESYKYLKLQDKTVTADEYEKAKEKWLKEKEESN
KKAQEELAKHVK

Nucleotide


Download         Length: 1959 bp        

>NTDB_id=40191 SOR_RS03235 WP_000748541.1 625589..627547(+) (amiA) [Streptococcus oralis Uo5]
ATGAAAAAGTCTAAGGCCAAGTATCTGACACTTGCAAGTGTCGTGTTAAGCGCAGGTATCTTACTGAGCGCATGTGGAAA
TTCAAGTAGCGCTTCTAAAACATATAACTATGTTTATTCGAGCGATCCATCTAGTTTGAACTATCTTGCAGAAAACCGTG
CAACAACTACCGACATCGTGACCAATTTGGTGGATGGGTTGATGGAAAATGACCAATACGGTAACTATGTTCCATCATTG
GCAGAGGATTGGACTGTTTCTCAGGACGGTTTGACCTATACTTACAAATTGCGTAAGGATGCAAAATGGTATACTTATGA
GGGTGAAGAATATGCCCCTGTAACGGCCCAAGACTTTGTGACAGGTTTGAAATATGCTGCTGATAAAAAATCCGAAGCCT
TGTACTTGGTTCAAGACTCTGTAGCAGGTTTGGATGACTATATCAACGGGAAAACAACTGACTTTTCAACTGTCGGTGTT
AAGGCGATTGACGACCAAACAGTTCAGTATACTTTGACACGTCCAGAACCTTATTGGAATTCTAAAACAACTTCAACCAT
TCTCTTCCCTGTCAATGCAGACTTCCTAAAATCAAAAGGGGATGATTTTGGTAAGGTAGATCCTTCTAGTATTTTGTATA
GTGGACCTTTCTTGATGAAATCTTTTGTTTCAAAATCTGTTATCGAATACAAGAAAAATCCAAATTACTGGGATGCTAAA
AATGTCTTTGTGGACGATGTGAAATTGACTTACTATGATGGTAGTGACCAAGATGCCCTAGCTCGTAACTTCGTAGAAGG
AGTATATAGCTACGCGCTTCTCTATCCAAATAGCTCAAGCTTTGAAGGCATTAAAGAGAAGAACAAGGATAACATCATCT
ATAGTATGCAAAACGCAACTTCTTATTACTTGAACTTCAACTTGGACAGAAAATCTTATAACTTCACGTCTAAATCCTCA
GATATTGAAAAGAAATCAACCCAAGAAGCAGTTCTGAATAAAAACTTCCGTCAAGCCTTCAACTATGCTTATAACCGTAC
AGCCTATGGAGCACAATCTCAAGGGGAGGACGGAGCAACAAAGATTATTCGTAACTTGGTTGTACCTCCAACATTTGTAA
GTATCAACGGAAAAGACTTTGGTGATGTTGTTTCAGAAAAGATGGTCAACTATGGCCAAGAATGGCAAGGAATCAACTTT
GCAGATGCGCAAGATCCATACTACAATCCTGACAAGGCTAAAGCTAAATTTGCAGAAGCTAAGAAAGAATTGGAAGCTAA
GGGTGTGCAATTCCCAATCCACTTGGATGTAACAGTTGACCAATCAGCTAAAAAAGGTGTACTTGAAGCAAGTTCTTTGA
AACAATCCATCGAATCTGTTCTAGGAGCTGAGAATGTGGTTATCGATATCCAACAATTATCAACAGATGACTTTGACAAC
TCTAGCTACCTAGCTCAAACTGCAGCTCAAAAAGACTTTGATATCTATAATGGCGGTTGGAGTGCTGACTACTTGGATCC
ATCAAGCTATCTTGATATCTTAAATGTCAATAACGGTGGTATATTGCAAAACATTGGTCTAGAACCAGGTGAGGTCAATG
ACAAGGCTAAGGCAGTTGGTCTGGATACTTACACTCAAATGTTAGAAGAAGCGAACAAGGAGCAAGAACCAGCGAAACGT
TATGAAAAATATGCTGAAATTCAAGCTTGGCTCGTTGATAGCGCCCTTGCAATTCCAAACGTTTCTCAGGGTGGAACACC
GACCTTGAGAAAGACAGTTCCATTCTCATCGCCATTCTCACAAGCTGGAAATAAGGGTGTCGAATCATACAAGTATCTCA
AGTTACAAGATAAGACTGTAACGGCTGATGAGTATGAAAAAGCGAAAGAAAAATGGCTAAAAGAAAAAGAAGAATCAAAT
AAAAAAGCCCAAGAAGAACTGGCAAAACACGTTAAATAA

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(76-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2QCF5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiA Streptococcus salivarius strain HSISS4

56.231

100

0.567
  amiA3 Streptococcus thermophilus LMG 18311

55.994

100

0.566
  amiA3 Streptococcus thermophilus LMD-9

55.69

100

0.563

Multiple sequence alignment