Detailed information
Bioinformatically predicted
Overview
| Name | pilA/pilAI | Type | Machinery gene |
| Locus tag | HUK77_RS23810 | Genome accession | NZ_CP054793 |
| Coordinates | 5143036..5143503 (-) | Length | 155 a.a. |
| NCBI ID | WP_003161762.1 | Uniprot ID | - |
| Organism | Pseudomonas aeruginosa strain SE5452 | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 5138036..5148503
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HUK77_RS23795 (HUK77_23795) | nadC | 5140536..5141384 (+) | 849 | WP_003104915.1 | carboxylating nicotinate-nucleotide diphosphorylase | - |
| HUK77_RS23805 (HUK77_23805) | - | 5141565..5142962 (-) | 1398 | WP_014603302.1 | O-antigen ligase family protein | - |
| HUK77_RS23810 (HUK77_23810) | pilA/pilAI | 5143036..5143503 (-) | 468 | WP_003161762.1 | pilin | Machinery gene |
| HUK77_RS23815 (HUK77_23815) | - | 5143587..5144749 (+) | 1163 | Protein_4724 | IS3-like element IS222 family transposase | - |
| HUK77_RS23820 (HUK77_23820) | pilB | 5144973..5146673 (+) | 1701 | WP_003107297.1 | type IV-A pilus assembly ATPase PilB | Machinery gene |
| HUK77_RS23825 (HUK77_23825) | pilC | 5146677..5147894 (+) | 1218 | WP_003161763.1 | type II secretion system F family protein | Machinery gene |
Sequence
Protein
Download Length: 155 a.a. Molecular weight: 15959.30 Da Isoelectric Point: 9.0145
>NTDB_id=401459 HUK77_RS23810 WP_003161762.1 5143036..5143503(-) (pilA/pilAI) [Pseudomonas aeruginosa strain SE5452]
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSKDNPADGEYDLGFTK
STLLAGNDGKAQITITGESSATPTIAGTLGNSAGKAISGAVITIKRSAEGVWTCAISGSPANWKANYAPANCPKS
MKAQKGFTLIELMIVVAIIGILAAIAIPQYQDYTARTQVTRAVSEISALKTAAESAILEGKKLVSKDNPADGEYDLGFTK
STLLAGNDGKAQITITGESSATPTIAGTLGNSAGKAISGAVITIKRSAEGVWTCAISGSPANWKANYAPANCPKS
Nucleotide
Download Length: 468 bp
>NTDB_id=401459 HUK77_RS23810 WP_003161762.1 5143036..5143503(-) (pilA/pilAI) [Pseudomonas aeruginosa strain SE5452]
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGTTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTTGTTTCCAAGGATAATCCCGCGGATGGGGAATATGATCTTGGTTTTACCAAG
TCTACTTTGCTTGCTGGCAACGACGGTAAGGCACAGATCACCATCACTGGCGAAAGCAGTGCAACCCCGACCATTGCGGG
GACTCTGGGTAACTCTGCTGGTAAGGCCATCAGCGGTGCCGTTATCACCATCAAGCGTAGTGCTGAGGGAGTCTGGACCT
GCGCTATCAGTGGGTCTCCGGCCAACTGGAAAGCCAACTACGCTCCGGCCAACTGCCCGAAATCCTAA
ATGAAAGCTCAGAAGGGTTTTACTCTGATCGAACTGATGATCGTGGTCGCGATCATCGGCATCCTGGCCGCCATTGCCAT
CCCGCAATACCAGGACTACACCGCCCGTACCCAGGTGACCCGTGCCGTGAGTGAAATCAGCGCGTTGAAGACCGCTGCGG
AGTCGGCGATTCTGGAAGGCAAGAAGCTTGTTTCCAAGGATAATCCCGCGGATGGGGAATATGATCTTGGTTTTACCAAG
TCTACTTTGCTTGCTGGCAACGACGGTAAGGCACAGATCACCATCACTGGCGAAAGCAGTGCAACCCCGACCATTGCGGG
GACTCTGGGTAACTCTGCTGGTAAGGCCATCAGCGGTGCCGTTATCACCATCAAGCGTAGTGCTGAGGGAGTCTGGACCT
GCGCTATCAGTGGGTCTCCGGCCAACTGGAAAGCCAACTACGCTCCGGCCAACTGCCCGAAATCCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA/pilAI | Pseudomonas stutzeri DSM 10701 |
45.679 |
100 |
0.477 |
| pilA | Pseudomonas aeruginosa PAK |
40.964 |
100 |
0.439 |
| pilA | Acinetobacter baumannii strain A118 |
43.312 |
100 |
0.439 |
| pilA | Ralstonia pseudosolanacearum GMI1000 |
37.427 |
100 |
0.413 |
| pilA | Vibrio cholerae O1 biovar El Tor strain E7946 |
43.262 |
90.968 |
0.394 |
| pilA | Vibrio cholerae strain A1552 |
43.262 |
90.968 |
0.394 |
| pilA | Vibrio cholerae C6706 |
43.262 |
90.968 |
0.394 |
| pilA/pilAII | Pseudomonas stutzeri DSM 10701 |
39.333 |
96.774 |
0.381 |
| pilA/pilA1 | Eikenella corrodens VA1 |
38.095 |
94.839 |
0.361 |