Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GKC27_RS15640 Genome accession   NZ_CP046130
Coordinates   2990859..2991500 (-) Length   213 a.a.
NCBI ID   WP_003213500.1    Uniprot ID   A0AB34QVB6
Organism   Bacillus pumilus strain DSM 27     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 2985859..2996500
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GKC27_RS15605 (GKC27_15435) - 2986970..2987401 (+) 432 WP_034620105.1 Na(+)/H(+) antiporter subunit B -
  GKC27_RS15610 (GKC27_15440) - 2987401..2987742 (+) 342 WP_003213576.1 Na(+)/H(+) antiporter subunit C -
  GKC27_RS15615 (GKC27_15445) - 2987735..2989213 (+) 1479 WP_034620106.1 Na+/H+ antiporter subunit D -
  GKC27_RS15620 (GKC27_15450) - 2989220..2989699 (+) 480 WP_003213059.1 Na+/H+ antiporter subunit E -
  GKC27_RS15625 (GKC27_15455) - 2989699..2989980 (+) 282 WP_003213177.1 Na(+)/H(+) antiporter subunit F1 -
  GKC27_RS15630 (GKC27_15460) mnhG 2989964..2990338 (+) 375 WP_003213369.1 monovalent cation/H(+) antiporter subunit G -
  GKC27_RS15635 (GKC27_15465) - 2990446..2990835 (-) 390 WP_003213775.1 hotdog fold thioesterase -
  GKC27_RS15640 (GKC27_15470) comA 2990859..2991500 (-) 642 WP_003213500.1 response regulator transcription factor Regulator
  GKC27_RS15645 (GKC27_15475) comP 2991581..2993872 (-) 2292 WP_003213749.1 ATP-binding protein Regulator
  GKC27_RS15650 (GKC27_15480) comX 2993879..2994058 (-) 180 WP_034620107.1 competence pheromone ComX -
  GKC27_RS15655 (GKC27_15485) - 2994036..2994959 (-) 924 WP_003212977.1 polyprenyl synthetase family protein -
  GKC27_RS15660 (GKC27_15490) degQ 2995111..2995251 (-) 141 WP_003213123.1 degradation enzyme regulation protein DegQ Regulator
  GKC27_RS15665 (GKC27_15495) - 2995757..2996110 (+) 354 WP_034620108.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 24155.54 Da        Isoelectric Point: 4.5204

>NTDB_id=401458 GKC27_RS15640 WP_003213500.1 2990859..2991500(-) (comA) [Bacillus pumilus strain DSM 27]
MKKILVIDDHPAVMEGTKSILESDQQLSVDCLSPDAEAAFLKTHDFSIYDVILMDLNLGDINGMDIAKQILETNQQVKII
IYTGYEVDDYFEEAIRAGLHGAISKTETKDKIIEYIHRTLQGEVVIQLSYLKKLISQQQEKPEQAQETDHELLTERECLI
LREVEKGYTNQEIADVLHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSESVL

Nucleotide


Download         Length: 642 bp        

>NTDB_id=401458 GKC27_RS15640 WP_003213500.1 2990859..2991500(-) (comA) [Bacillus pumilus strain DSM 27]
ATGAAGAAGATATTGGTCATTGATGATCATCCGGCTGTCATGGAAGGGACAAAAAGCATATTAGAATCAGATCAGCAGCT
ATCAGTCGATTGTTTAAGTCCTGATGCAGAAGCCGCCTTTTTAAAGACGCATGACTTTTCCATCTATGATGTGATTTTGA
TGGATTTAAATCTCGGGGATATCAATGGAATGGACATTGCGAAACAAATTCTAGAAACCAACCAACAAGTGAAAATCATC
ATTTATACAGGGTATGAAGTAGATGATTATTTTGAAGAGGCCATTCGGGCTGGATTGCACGGTGCAATTAGTAAAACAGA
GACAAAAGACAAAATTATTGAATACATACACCGCACATTGCAAGGAGAAGTTGTCATTCAGCTATCCTATTTAAAGAAAT
TAATTTCACAGCAGCAAGAAAAGCCAGAACAGGCGCAGGAGACCGATCACGAGCTGTTAACAGAGCGAGAGTGTTTGATC
CTCAGAGAAGTGGAAAAAGGATACACGAACCAAGAGATTGCCGATGTGCTGCATTTGAGCAAACGCTCGATTGAATACAG
CTTGACGTCCATCTTTAATAAGCTGAATGTTGGCTCTCGAACCGAAGCGGTGTTAATTGCAAAATCTGAAAGTGTGCTGT
AA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(152-207)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

71.028

100

0.714

Multiple sequence alignment