Detailed information    

insolico Bioinformatically predicted

Overview

Name   rexB   Type   Machinery gene
Locus tag   SSAL_RS01540 Genome accession   NC_017594
Coordinates   294833..298153 (+) Length   1106 a.a.
NCBI ID   WP_045001441.1    Uniprot ID   -
Organism   Streptococcus salivarius 57.I     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 289833..303153
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SSAL_RS01525 (Ssal_00319) - 289876..291618 (+) 1743 WP_014632631.1 DUF6287 domain-containing protein -
  SSAL_RS01530 (Ssal_00320) - 291866..293176 (+) 1311 WP_014632632.1 hypothetical protein -
  SSAL_RS01535 (Ssal_00321) - 293212..294585 (+) 1374 WP_004183414.1 GHKL domain-containing protein -
  SSAL_RS01540 (Ssal_00322) rexB 294833..298153 (+) 3321 WP_045001441.1 ATP-dependent nuclease subunit B Machinery gene
  SSAL_RS01545 (Ssal_00325) rexA 298143..301796 (+) 3654 WP_014632634.1 helicase-exonuclease AddAB subunit AddA Machinery gene
  SSAL_RS01550 (Ssal_00327) - 302148..302879 (-) 732 WP_014632635.1 DUF554 domain-containing protein -

Sequence

Protein


Download         Length: 1106 a.a.        Molecular weight: 126233.61 Da        Isoelectric Point: 4.7862

>NTDB_id=40145 SSAL_RS01540 WP_045001441.1 294833..298153(+) (rexB) [Streptococcus salivarius 57.I]
MKLLYTDMSQDLTEILTEQATSYAQKGKRVFYIAPNALSFEKERKVLEYLPQSASFEITVTRFTQMARYFILNTSNPKTQ
LDDTGLAMIFYKVLSHMDDDELKVYGRLRKDSNFINQLVDLYKELQQANMTVLDLQHLDQAEKQEDLVRIFSAAQDLLLA
GDFDNQSKLSAFFKEITSGHLDKALSNTVLVIDGFTRFSAEEEALVALLNDKCHQIVIGTYASQKAYKANFVYGNVYQAS
VDFLRTLAQTYKVTPDYVTTDKEGNPSFARISRLLESRHDFITVDEKVTDQDKQALQVWEVVNQKEEVAQVAKSIRQLLA
DGKRYKDILVLLGDEESYKLQVGQIFRKFDIPYYFGKEETMSSHPLVQFVDSLERIKRYNYRVEDLLNLVKSGLYGGFTQ
EDLDLFEYYVNFADIKGRHKFLSDFTANSRDKYDLDQLNALRSQLVEPLDKLLNSRKQKGSSLLKKLVVFLEAVQVPSQM
ASLTAKASEAEKEQNEQVWKAFTQLLEQVETIFGEETLSVDDFLSILRSGMLACDYRTVPATVDVVNVKKYDLIQPHSAP
YVFALGMTQSHFPKVGQNKSLLSDEERCRINEATDEHRSLDIVTQSNSQRGHFVAMSLFNAASEQLVLSQPQILNETQDD
MSVYLKELLDLGLPLVEKGRNRFEAKGDQIGNYKDLLSTVIALNSSHLDADLDKETQTFWSVAVRYLRKRLDKDQVLIPN
VIDDVTTTKVDDQVMQLVFPGEEPLKLSASALTTFYNNQYLYFLRYVLGLEELESIHPDARHHGTYLHRVFERVMGDSSS
ENFDDKLEKAIAQTNQEQPFEILYTEDQESRLSRQILEDIARSTASVLRDNAAVKVEREEAKFDLLLANSIKITGIIDRV
DRLTDGALGVVDYKSGKNVFDIQKFYNGLSPQLVTYLEALRQTYKVDADQLFGAMYLHMQDPQLNLAQFGLDKLAAQAHK
ELTYKGLFVASETEHLAGGNYDLQKTVTYDKEDLETLLDYNIKLFTDAAEIIRSGNFAVNPYTEDGKSVQGDQIKSITHF
EADRHMGQARKLLRLPSKGKKEAYLELMTKDEDDNEMQVAETIVPFPVTEQAVTVDKKDQEDNHVD

Nucleotide


Download         Length: 3321 bp        

>NTDB_id=40145 SSAL_RS01540 WP_045001441.1 294833..298153(+) (rexB) [Streptococcus salivarius 57.I]
ATGAAATTACTTTATACGGATATGTCTCAGGATTTAACTGAAATTCTGACGGAGCAGGCGACTAGCTATGCTCAAAAGGG
AAAGAGGGTCTTTTATATTGCCCCTAATGCCCTATCATTTGAGAAGGAGCGTAAGGTCTTGGAATACCTGCCTCAGTCAG
CGTCCTTTGAGATTACGGTGACTCGTTTTACTCAGATGGCTAGGTACTTTATTCTCAATACGAGTAACCCAAAAACTCAG
TTGGATGATACTGGTCTGGCCATGATTTTTTATAAGGTCTTGTCACATATGGACGATGATGAGCTCAAGGTTTATGGTCG
TTTACGCAAGGATAGTAACTTTATTAATCAATTGGTGGACCTTTACAAAGAGTTGCAGCAGGCCAATATGACAGTTCTGG
ATTTGCAGCATTTGGATCAGGCGGAGAAACAAGAGGATTTGGTAAGGATTTTCAGTGCGGCTCAGGATCTCTTGTTGGCG
GGAGATTTTGATAATCAATCAAAACTCAGTGCCTTCTTCAAGGAGATTACCTCAGGCCACCTAGATAAGGCCTTGAGTAA
CACGGTTTTGGTCATTGATGGCTTTACGCGTTTCTCTGCCGAGGAGGAAGCACTGGTTGCGCTCTTGAATGATAAGTGCC
ACCAGATTGTCATTGGGACTTATGCCAGTCAAAAAGCTTATAAGGCTAACTTTGTTTATGGCAATGTTTATCAGGCCTCA
GTGGATTTTTTGAGGACTTTGGCTCAGACCTATAAGGTGACACCTGACTATGTGACGACAGACAAAGAGGGCAATCCTTC
TTTTGCACGTATTAGTCGCCTTTTGGAGAGCCGTCATGATTTTATTACGGTAGATGAGAAGGTTACGGATCAAGACAAGC
AAGCCTTGCAGGTCTGGGAAGTGGTCAACCAAAAGGAAGAAGTGGCTCAGGTTGCCAAGAGTATTCGTCAGTTACTGGCG
GATGGCAAGCGCTACAAGGATATCTTGGTCCTGCTTGGTGATGAGGAGAGTTATAAGCTTCAGGTGGGTCAGATTTTCCG
AAAATTTGATATTCCCTATTATTTCGGTAAGGAAGAAACCATGTCTAGCCATCCTTTGGTGCAGTTTGTGGATTCGCTAG
AGCGTATCAAGCGCTATAATTATCGTGTCGAGGATTTGCTTAATCTCGTAAAATCAGGTCTCTATGGCGGTTTTACTCAA
GAGGACTTAGACCTTTTTGAGTATTATGTCAATTTTGCAGATATCAAAGGGCGTCACAAGTTCCTGTCTGATTTTACGGC
CAATAGTCGTGATAAGTATGATTTAGACCAGCTTAATGCCTTGCGCTCACAACTGGTAGAGCCCTTGGACAAGTTGCTTA
ACAGTCGCAAACAAAAGGGTTCTAGTCTGCTTAAGAAACTTGTGGTCTTTTTAGAGGCTGTGCAAGTGCCAAGTCAGATG
GCTAGTTTGACTGCCAAGGCCAGTGAGGCTGAAAAAGAACAGAATGAACAGGTCTGGAAGGCTTTCACACAACTCTTGGA
GCAGGTTGAGACTATTTTTGGAGAAGAAACACTGTCAGTGGACGACTTTTTGTCCATCTTGCGTTCGGGAATGTTGGCCT
GTGATTACCGTACGGTTCCAGCCACTGTTGATGTGGTCAATGTGAAGAAATACGATTTGATTCAACCACATTCAGCTCCT
TATGTTTTTGCCTTAGGCATGACTCAGTCGCATTTTCCAAAGGTTGGGCAAAATAAGAGTCTCCTGTCTGATGAGGAGCG
TTGTCGTATCAATGAGGCCACGGATGAGCATAGGAGTTTGGATATTGTTACGCAGAGTAATAGTCAGCGGGGGCATTTTG
TGGCCATGTCGCTTTTCAATGCGGCTAGTGAACAATTGGTGCTTAGTCAGCCACAAATTCTCAATGAGACGCAGGATGAC
ATGTCGGTTTATTTGAAGGAACTTCTTGACCTTGGTCTTCCTTTGGTTGAAAAGGGACGTAATCGTTTCGAGGCTAAGGG
TGACCAAATTGGGAACTACAAGGACCTCCTATCGACTGTCATTGCTCTTAACAGCAGCCATCTAGATGCTGATTTGGACA
AGGAAACGCAGACGTTCTGGTCAGTTGCTGTGCGTTATCTCCGTAAGCGACTTGATAAGGACCAAGTCTTGATTCCAAAT
GTGATTGACGATGTGACGACGACCAAGGTGGATGATCAGGTCATGCAGCTGGTGTTTCCGGGGGAAGAACCACTAAAATT
ATCAGCTTCGGCTCTGACGACCTTCTATAACAACCAATATCTTTATTTCTTGCGTTATGTTTTGGGACTTGAAGAGTTGG
AGTCCATCCATCCAGATGCCCGACACCACGGGACTTATTTACACCGTGTCTTTGAGCGTGTGATGGGTGATTCTTCGTCA
GAAAACTTCGATGATAAATTGGAAAAGGCTATTGCTCAGACCAATCAGGAACAACCCTTTGAAATTCTCTATACAGAGGA
CCAAGAGAGTCGCTTGTCTCGTCAGATCTTGGAAGATATCGCCCGTTCAACTGCCAGTGTTTTGCGTGACAATGCGGCCG
TTAAGGTTGAGCGTGAGGAAGCCAAGTTTGACTTGCTTTTAGCAAATAGCATCAAGATTACAGGGATTATTGACCGAGTG
GACCGTTTAACAGATGGGGCTCTGGGTGTCGTTGACTATAAATCAGGTAAAAATGTCTTTGACATTCAGAAATTTTACAA
TGGCCTCAGTCCGCAATTGGTGACCTATCTGGAGGCCCTTCGACAAACCTATAAGGTCGATGCTGACCAGCTTTTTGGTG
CCATGTATCTTCACATGCAGGACCCACAACTTAACCTAGCCCAGTTTGGTCTGGATAAGCTAGCAGCTCAGGCTCATAAG
GAATTGACCTATAAGGGGCTCTTTGTAGCTTCAGAAACAGAGCATCTGGCTGGTGGAAACTATGATTTACAAAAGACTGT
CACCTATGACAAGGAGGACCTAGAAACCTTGTTAGACTACAATATTAAACTCTTTACAGATGCTGCTGAGATTATTCGAA
GTGGAAATTTTGCGGTCAATCCTTATACCGAGGATGGCAAGTCTGTTCAAGGGGATCAAATCAAGTCTATTACTCATTTT
GAGGCCGACCGCCACATGGGACAGGCTCGTAAACTCTTGCGTTTACCAAGTAAGGGCAAGAAGGAAGCCTATTTGGAGCT
GATGACAAAAGATGAGGACGATAATGAGATGCAAGTTGCTGAAACTATCGTCCCCTTTCCAGTCACTGAACAAGCTGTGA
CAGTAGACAAAAAAGACCAGGAGGACAACCATGTTGACTAA

Domains

Predicted by InterProScan.

PD-(D/E)XK nuclease superfamily (PDDEXK_1)

(747-1023)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rexB Streptococcus pneumoniae R6

43.658

98.373

0.429

Multiple sequence alignment