Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   HMPREF9243_RS00100 Genome accession   NC_015278
Coordinates   21369..21941 (+) Length   190 a.a.
NCBI ID   WP_013669178.1    Uniprot ID   F2I5E0
Organism   Aerococcus sp. Group     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 16369..26941
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HMPREF9243_RS00080 (HMPREF9243_0013) - 16966..18090 (-) 1125 WP_081456572.1 asparaginase -
  HMPREF9243_RS00085 (HMPREF9243_0014) - 17985..19403 (-) 1419 WP_013668695.1 YfcC family protein -
  HMPREF9243_RS00090 (HMPREF9243_0015) - 19396..20697 (-) 1302 WP_013668482.1 amidohydrolase -
  HMPREF9243_RS00095 (HMPREF9243_0016) rpsF 21031..21333 (+) 303 WP_013669618.1 30S ribosomal protein S6 -
  HMPREF9243_RS00100 (HMPREF9243_0017) ssb 21369..21941 (+) 573 WP_013669178.1 single-stranded DNA-binding protein Machinery gene
  HMPREF9243_RS00105 (HMPREF9243_0018) rpsR 21969..22208 (+) 240 WP_013669454.1 30S ribosomal protein S18 -
  HMPREF9243_RS00110 (HMPREF9243_0019) - 22436..22645 (+) 210 WP_013669762.1 helix-turn-helix transcriptional regulator -
  HMPREF9243_RS00115 (HMPREF9243_0020) - 22689..23147 (+) 459 WP_231286953.1 DUF3278 domain-containing protein -

Sequence

Protein


Download         Length: 190 a.a.        Molecular weight: 20863.46 Da        Isoelectric Point: 4.3058

>NTDB_id=40145 HMPREF9243_RS00100 WP_013669178.1 21369..21941(+) (ssb) [Aerococcus sp. Group]
MINNVVLVGRLTREVDLRYTQSGTAVANFTVACDRNYRNAQGETQTDFINCVMWRKAAENFAKFTRKGSLVGIEGNIQTR
NYENQQGQRVYVTEVLANNFSLLEPKSVTEQRPQGSDNGNNFGNSGNSFANDSFGSNQSFGGYNNQQESPSMNDNSFGGS
NDPFVGGNNNPFPSNDNDGSINIADDDLPF

Nucleotide


Download         Length: 573 bp        

>NTDB_id=40145 HMPREF9243_RS00100 WP_013669178.1 21369..21941(+) (ssb) [Aerococcus sp. Group]
ATGATTAATAATGTCGTCTTAGTCGGCCGATTAACTCGCGAAGTTGATCTACGTTATACCCAAAGTGGAACTGCAGTAGC
CAACTTTACTGTAGCTTGTGACCGTAACTACCGCAATGCCCAAGGTGAAACCCAAACGGATTTCATTAATTGTGTAATGT
GGCGTAAAGCAGCTGAAAACTTTGCTAAATTCACACGGAAAGGGTCTTTGGTAGGGATTGAAGGGAATATTCAAACCCGT
AACTATGAAAACCAACAAGGCCAACGTGTCTATGTGACTGAAGTTCTAGCGAATAACTTTAGCTTATTGGAACCTAAGAG
TGTCACTGAACAACGCCCACAAGGCAGTGACAATGGCAATAACTTTGGCAACTCAGGCAATAGTTTTGCTAATGACTCTT
TTGGCTCAAATCAAAGTTTTGGCGGCTATAATAATCAACAAGAATCCCCTTCAATGAATGACAACAGCTTTGGTGGATCC
AATGATCCATTTGTGGGAGGAAATAATAATCCTTTCCCATCAAATGATAATGACGGATCGATCAATATCGCTGATGATGA
TCTTCCATTCTAG

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB F2I5E0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

54.404

100

0.553
  ssbA Bacillus subtilis subsp. subtilis str. 168

49.215

100

0.495

Multiple sequence alignment