Detailed information NTG0401412

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: HUK77_RS06750
• Genome accession: NZ_CP054793
• Coordinates: 1443032..1444036 (+)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SE5452
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1438032..1449036

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
HUK77_RS06720 (HUK77_06725)	fghA	1438124..1438975 (+)	852	WP_004345459.1	S-formylglutathione hydrolase	-
HUK77_RS06725 (HUK77_06730)	ispF	1439046..1439519 (+)	474	WP_003098560.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
HUK77_RS06730 (HUK77_06735)	truD	1439516..1440583 (+)	1068	WP_004345456.1	tRNA pseudouridine(13) synthase TruD	-
HUK77_RS06735 (HUK77_06740)	surE	1440571..1441320 (+)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
HUK77_RS06740 (HUK77_06745)	-	1441353..1441988 (+)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
HUK77_RS06745 (HUK77_06750)	-	1442034..1442927 (+)	894	WP_003143263.1	peptidoglycan DD-metalloendopeptidase family protein	-
HUK77_RS06750 (HUK77_06755)	rpoS	1443032..1444036 (+)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
HUK77_RS06755 (HUK77_06760)	fdxA	1444462..1444785 (-)	324	WP_003092272.1	ferredoxin FdxA	-
HUK77_RS06760 (HUK77_06765)	mutS	1444852..1447419 (-)	2568	WP_125075372.1	DNA mismatch repair protein MutS	-
HUK77_RS06765 (HUK77_06770)	-	1447545..1448552 (-)	1008	WP_003098486.1	TolB family protein	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=401412 HUK77_RS06750 WP_003113871.1 1443032..1444036(+) (rpoS) [Pseudomonas aeruginosa strain SE5452]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=401412 HUK77_RS06750 WP_003113871.1 1443032..1444036(+) (rpoS) [Pseudomonas aeruginosa strain SE5452]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAG
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGTCACGAAAGCAGCACGCTGG
AAGAGGTCGGCCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATTCTGGAGAAGAATGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653