Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   GJV39_RS11750 Genome accession   NZ_CP046114
Coordinates   2308937..2309575 (+) Length   212 a.a.
NCBI ID   WP_005711167.1    Uniprot ID   B8F752
Organism   Glaesserella parasuis strain SCW0912     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 2303937..2314575
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJV39_RS11705 (GJV39_11705) rplP 2303969..2304379 (-) 411 WP_005711177.1 50S ribosomal protein L16 -
  GJV39_RS11710 (GJV39_11710) rpsC 2304392..2305096 (-) 705 WP_010786465.1 30S ribosomal protein S3 -
  GJV39_RS11715 (GJV39_11715) rplV 2305114..2305446 (-) 333 WP_005706427.1 50S ribosomal protein L22 -
  GJV39_RS11720 (GJV39_11720) rpsS 2305457..2305732 (-) 276 WP_005539416.1 30S ribosomal protein S19 -
  GJV39_RS11725 (GJV39_11725) rplB 2305761..2306582 (-) 822 WP_005711173.1 50S ribosomal protein L2 -
  GJV39_RS11730 (GJV39_11730) rplW 2306603..2306908 (-) 306 WP_005711171.1 50S ribosomal protein L23 -
  GJV39_RS11735 (GJV39_11735) rplD 2306905..2307507 (-) 603 WP_005711169.1 50S ribosomal protein L4 -
  GJV39_RS11740 (GJV39_11740) rplC 2307523..2308149 (-) 627 WP_010786462.1 50S ribosomal protein L3 -
  GJV39_RS11745 (GJV39_11745) rpsJ 2308166..2308477 (-) 312 WP_001181005.1 30S ribosomal protein S10 -
  GJV39_RS11750 (GJV39_11750) sxy/tfoX 2308937..2309575 (+) 639 WP_005711167.1 TfoX/Sxy family protein Regulator
  GJV39_RS11755 (GJV39_11755) fumC 2309722..2311116 (+) 1395 WP_010786461.1 class II fumarate hydratase -
  GJV39_RS11760 (GJV39_11760) - 2311298..2312476 (+) 1179 WP_005711165.1 ATP-grasp domain-containing protein -
  GJV39_RS11765 (GJV39_11765) - 2312611..2313369 (+) 759 WP_016528660.1 esterase family protein -

Sequence

Protein


Download         Length: 212 a.a.        Molecular weight: 24705.70 Da        Isoelectric Point: 9.4406

>NTDB_id=401154 GJV39_RS11750 WP_005711167.1 2308937..2309575(+) (sxy/tfoX) [Glaesserella parasuis strain SCW0912]
MKYIDAKTQHIRNLLYPIIGETKAKTYFSYYGIMKDKAMFALYKDDKFYLHIPNHCLEENIAKNLSLLLDSQTGINLKSF
YLIPPDLLNDLQQVSHWVVESVKDILHTKQNQYMEKKKCIRTLPNMTIQLERTLKKLGVYSIDDLVDRGEIDIFVNLLKI
GVDADQALLFRLHGAINRQYIYTISDKTKQNLLNDADNALYAAGLRKRFNTR

Nucleotide


Download         Length: 639 bp        

>NTDB_id=401154 GJV39_RS11750 WP_005711167.1 2308937..2309575(+) (sxy/tfoX) [Glaesserella parasuis strain SCW0912]
ATGAAATACATTGATGCAAAAACACAACATATCCGTAATCTTCTTTACCCAATCATTGGCGAAACGAAAGCAAAAACCTA
TTTTTCCTATTATGGAATAATGAAAGATAAAGCTATGTTTGCTTTATACAAAGATGATAAATTCTATCTACACATACCAA
ATCATTGCTTAGAGGAAAACATAGCTAAAAATTTATCTCTTCTTCTCGACTCTCAGACTGGCATTAATCTAAAATCCTTC
TATTTAATCCCTCCCGATCTACTTAATGACTTACAACAAGTTTCACATTGGGTCGTCGAAAGTGTGAAAGATATTCTCCA
TACGAAACAAAATCAGTATATGGAAAAGAAAAAATGTATTCGGACGCTGCCGAATATGACAATACAACTCGAAAGGACAT
TAAAAAAACTAGGTGTCTACTCTATTGATGATTTAGTAGATAGGGGCGAGATTGATATTTTCGTCAACCTCCTTAAAATA
GGTGTTGATGCTGATCAAGCTTTATTATTTCGACTTCATGGAGCAATAAATCGACAATATATCTATACGATTTCAGACAA
AACAAAGCAGAATTTACTCAATGATGCAGATAATGCCTTGTATGCTGCCGGACTCCGAAAGCGATTTAATACTAGATAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-103)

TfoX C-terminal domain (TfoX_C)

(118-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B8F752

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Glaesserella parasuis strain SC1401

73.239

100

0.736
  sxy/tfoX Actinobacillus suis H91-0380

43.128

99.528

0.429
  sxy/tfoX Actinobacillus pleuropneumoniae strain HS143

38.647

97.642

0.377

Multiple sequence alignment