Detailed information
Bioinformatically predicted
Overview
| Name | pilA | Type | Machinery gene |
| Locus tag | GJV39_RS11010 | Genome accession | NZ_CP046114 |
| Coordinates | 2174436..2174900 (-) | Length | 154 a.a. |
| NCBI ID | WP_005711781.1 | Uniprot ID | K4JWE9 |
| Organism | Glaesserella parasuis strain SCW0912 | ||
| Function | type IV pilus biogenesis and function (predicted from homology) DNA binding and uptake |
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Genomic Context
Location: 2169436..2179900
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| GJV39_RS10990 (GJV39_10990) | dapE | 2169932..2171065 (-) | 1134 | WP_005711772.1 | succinyl-diaminopimelate desuccinylase | - |
| GJV39_RS10995 (GJV39_10995) | - | 2171149..2171817 (-) | 669 | WP_021110377.1 | prepilin peptidase | - |
| GJV39_RS11000 (GJV39_11000) | pilC | 2171814..2173010 (-) | 1197 | WP_021110378.1 | type II secretion system F family protein | Machinery gene |
| GJV39_RS11005 (GJV39_11005) | pilB | 2173003..2174388 (-) | 1386 | WP_021110379.1 | GspE/PulE family protein | Machinery gene |
| GJV39_RS11010 (GJV39_11010) | pilA | 2174436..2174900 (-) | 465 | WP_005711781.1 | pilin | Machinery gene |
| GJV39_RS11015 (GJV39_11015) | radA | 2175088..2176464 (+) | 1377 | WP_021110380.1 | DNA repair protein RadA | - |
| GJV39_RS11020 (GJV39_11020) | gmk | 2176517..2177143 (-) | 627 | WP_005711785.1 | guanylate kinase | - |
| GJV39_RS11025 (GJV39_11025) | - | 2177212..2178183 (-) | 972 | WP_012621529.1 | IS110 family transposase | - |
| GJV39_RS11030 (GJV39_11030) | gpt | 2178584..2179063 (-) | 480 | WP_005714020.1 | xanthine phosphoribosyltransferase | - |
Sequence
Protein
Download Length: 154 a.a. Molecular weight: 16379.04 Da Isoelectric Point: 9.3428
>NTDB_id=401151 GJV39_RS11010 WP_005711781.1 2174436..2174900(-) (pilA) [Glaesserella parasuis strain SCW0912]
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGQKATP
MKKIRLIRPLAKAFTLIELMIVIAIIAILATIAIPSYTSYTQKAALSELLSASASYKSDVEICIYNVGDKKISECSSGKN
GVRADKSDVPDAKYLKSISVASGVITVAGKGNIDGYGYTMTPKFANNNITWATSCQGADISLFPANFCGQKATP
Nucleotide
Download Length: 465 bp
>NTDB_id=401151 GJV39_RS11010 WP_005711781.1 2174436..2174900(-) (pilA) [Glaesserella parasuis strain SCW0912]
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCAAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGCAGAAAGCTACACCGTAA
ATGAAAAAAATCAGGTTAATTCGACCGCTTGCAAAAGCCTTTACCTTAATTGAGTTAATGATCGTGATCGCCATCATTGC
CATTTTAGCAACAATAGCAATCCCGTCTTACACCAGTTACACCCAAAAGGCAGCTCTCTCTGAGTTATTAAGTGCTTCCG
CATCTTATAAATCCGATGTGGAAATTTGTATTTATAACGTAGGGGATAAAAAAATCTCGGAATGTAGTTCAGGTAAAAAT
GGCGTTCGAGCAGATAAATCCGATGTCCCTGACGCAAAATATCTTAAATCTATTTCCGTCGCTTCGGGGGTAATCACCGT
GGCAGGTAAAGGCAATATTGATGGCTACGGCTACACAATGACCCCGAAATTTGCTAATAACAACATCACTTGGGCAACAA
GCTGTCAAGGGGCTGACATTAGTTTGTTCCCTGCGAATTTTTGTGGGCAGAAAGCTACACCGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilA | Glaesserella parasuis strain SC1401 |
100 |
100 |
1 |
| pilA | Haemophilus influenzae Rd KW20 |
55.034 |
96.753 |
0.532 |
| pilA | Haemophilus influenzae 86-028NP |
54.362 |
96.753 |
0.526 |