Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   GJD93_RS13425 Genome accession   NZ_CP046045
Coordinates   2559746..2561179 (+) Length   477 a.a.
NCBI ID   WP_004975695.1    Uniprot ID   A0AAP9KJZ5
Organism   Acinetobacter towneri strain 19110F47     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2554746..2566179
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS13405 (GJD93_13395) thrC 2554871..2556010 (+) 1140 WP_004975706.1 threonine synthase -
  GJD93_RS13410 (GJD93_13400) - 2556131..2557222 (-) 1092 WP_154321147.1 serine hydrolase -
  GJD93_RS13415 (GJD93_13405) - 2557438..2558073 (+) 636 WP_004975702.1 response regulator -
  GJD93_RS13420 (GJD93_13410) pilS 2558114..2559676 (+) 1563 WP_154321148.1 sensor histidine kinase Regulator
  GJD93_RS13425 (GJD93_13415) pilR 2559746..2561179 (+) 1434 WP_004975695.1 sigma-54-dependent transcriptional regulator Regulator
  GJD93_RS13430 (GJD93_13420) - 2561229..2562392 (-) 1164 WP_136144310.1 S41 family peptidase -
  GJD93_RS13435 (GJD93_13425) gpmI 2562417..2563964 (-) 1548 WP_004975686.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -
  GJD93_RS13440 (GJD93_13430) lptG 2564110..2565180 (-) 1071 WP_004975683.1 LPS export ABC transporter permease LptG -

Sequence

Protein


Download         Length: 477 a.a.        Molecular weight: 53703.57 Da        Isoelectric Point: 5.8670

>NTDB_id=400654 GJD93_RS13425 WP_004975695.1 2559746..2561179(+) (pilR) [Acinetobacter towneri strain 19110F47]
MHAVQPLVLLVDDEEDLCTLMQMTLARMGIQTHVAYRLAQAKQLLAEHQYDACLTDLNLPDGNGLQLVEWISEQYPNVPV
AVLTAYGNMDIAIAALKAGAFDFVSKPVNQIHLQQLLEKALNKPFDTTDHHSQDQLEYKMLIGQSLPIQQLRSTIKKIAR
SQAPVFITGESGTGKEVVANLVHRLSNRNEGPFIAINCGAIPTELMESELFGHKKGSFTGATQDKQGLIQSAHGGSLFLD
EIAELPLSMQVKLLRAVQEKRIRPVGSDSEIDVDFRVISASHQDLESLVQQGRFRQDLFFRIHVMDLVLPALRERGQDIL
LLADHFIQKVAQEWDIPAKQLTPRAQQFLLEQYYPGNVRELRNIIERAITLSDDDVIDLKHLQTAPLRQFSMSNTATTES
QPTAETPQQIVTDVLLTGRKLPEEGLEAYLEKVEKDILLNALHLTHWNRTLAAKKLGMSFRSLRYRLKKFGLDTEDE

Nucleotide


Download         Length: 1434 bp        

>NTDB_id=400654 GJD93_RS13425 WP_004975695.1 2559746..2561179(+) (pilR) [Acinetobacter towneri strain 19110F47]
ATGCACGCTGTTCAACCTTTGGTTTTATTGGTCGATGACGAAGAAGACCTTTGTACCCTCATGCAGATGACTTTGGCACG
TATGGGGATTCAAACCCATGTCGCGTATCGTTTAGCACAAGCCAAGCAATTATTGGCAGAACATCAGTACGATGCTTGCT
TAACCGACTTAAACCTGCCCGATGGCAATGGCTTGCAACTGGTTGAATGGATTTCCGAACAATATCCGAATGTACCTGTT
GCCGTATTGACCGCCTACGGCAATATGGATATTGCGATTGCTGCTTTAAAAGCAGGTGCATTTGACTTTGTCAGCAAGCC
TGTCAATCAAATACATTTACAGCAACTCCTTGAAAAAGCACTGAATAAACCTTTCGACACCACCGATCATCACAGCCAAG
ATCAGCTTGAATATAAAATGTTGATTGGGCAGTCTTTGCCTATTCAACAATTGCGCAGCACCATCAAAAAAATTGCGCGC
TCGCAAGCGCCTGTATTTATTACTGGGGAGTCAGGGACAGGTAAAGAAGTTGTCGCCAATTTGGTTCACCGCTTAAGCAA
CCGCAACGAAGGGCCATTTATTGCAATTAACTGTGGCGCAATTCCCACCGAACTCATGGAAAGCGAGCTATTTGGACATA
AAAAAGGTAGCTTTACAGGCGCGACTCAAGACAAACAAGGTCTGATTCAATCTGCACATGGCGGCAGCTTATTTTTAGAC
GAAATTGCCGAACTGCCACTGAGCATGCAAGTCAAACTGCTGCGTGCCGTTCAGGAAAAGCGCATCCGTCCTGTGGGTTC
AGACAGCGAAATTGATGTCGATTTTCGGGTGATCAGCGCCAGTCATCAGGACTTAGAAAGTTTGGTTCAGCAAGGACGTT
TCCGTCAGGATTTATTTTTCCGTATTCACGTGATGGATTTGGTCTTGCCTGCCCTGCGTGAACGTGGACAAGATATTCTA
TTATTGGCAGACCACTTCATTCAAAAAGTTGCACAAGAATGGGACATTCCTGCCAAACAACTGACACCTCGTGCCCAGCA
ATTTTTATTAGAACAGTACTATCCGGGTAATGTGCGTGAGTTACGCAATATTATTGAACGTGCCATTACCCTGAGTGATG
ATGATGTTATTGATCTCAAACACTTACAAACCGCACCCTTGCGCCAATTCAGTATGAGCAATACAGCAACCACTGAATCA
CAACCTACAGCAGAAACACCACAGCAGATCGTGACAGATGTATTGCTGACAGGACGCAAACTGCCTGAAGAAGGTTTAGA
AGCCTACTTGGAAAAAGTAGAAAAAGACATTTTACTGAATGCGCTGCACCTGACCCACTGGAACCGTACGTTGGCAGCAA
AAAAATTGGGCATGTCTTTCCGTTCTTTGCGCTATCGTCTGAAAAAGTTTGGATTAGATACTGAAGATGAGTAA

Domains

Predicted by InterproScan.

Bacterial regulatory protein, Fis family (HTH_8)

(430-470)

Sigma-54 interaction domain (Sigma54_activat)

(141-307)

Response regulator receiver domain (Response_reg)

(8-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Acinetobacter baumannii strain A118

76.827

100

0.771
  pilR Pseudomonas aeruginosa PAK

49.785

97.694

0.486

Multiple sequence alignment