Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GJD93_RS13420 Genome accession   NZ_CP046045
Coordinates   2558114..2559676 (+) Length   520 a.a.
NCBI ID   WP_154321148.1    Uniprot ID   A0AAP9KKH1
Organism   Acinetobacter towneri strain 19110F47     
Function   regulation of type IV pilus assembly (predicted from homology)   
Competence regulation

Genomic Context

Location: 2553114..2564676
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJD93_RS13400 (GJD93_13390) - 2553509..2554813 (+) 1305 WP_004975708.1 homoserine dehydrogenase -
  GJD93_RS13405 (GJD93_13395) thrC 2554871..2556010 (+) 1140 WP_004975706.1 threonine synthase -
  GJD93_RS13410 (GJD93_13400) - 2556131..2557222 (-) 1092 WP_154321147.1 serine hydrolase -
  GJD93_RS13415 (GJD93_13405) - 2557438..2558073 (+) 636 WP_004975702.1 response regulator -
  GJD93_RS13420 (GJD93_13410) pilS 2558114..2559676 (+) 1563 WP_154321148.1 sensor histidine kinase Regulator
  GJD93_RS13425 (GJD93_13415) pilR 2559746..2561179 (+) 1434 WP_004975695.1 sigma-54-dependent transcriptional regulator Regulator
  GJD93_RS13430 (GJD93_13420) - 2561229..2562392 (-) 1164 WP_136144310.1 S41 family peptidase -
  GJD93_RS13435 (GJD93_13425) gpmI 2562417..2563964 (-) 1548 WP_004975686.1 2,3-bisphosphoglycerate-independent phosphoglycerate mutase -

Sequence

Protein


Download         Length: 520 a.a.        Molecular weight: 59220.71 Da        Isoelectric Point: 7.1637

>NTDB_id=400653 GJD93_RS13420 WP_154321148.1 2558114..2559676(+) (pilS) [Acinetobacter towneri strain 19110F47]
MPDLKQHSELNQYHLGMWYGTYRLLIAFCLLLITLLTFQQLGTQYQHPGLYLYTLVCYFIFSCLQLISYKYIPFKSTQQL
TLFFAVDIIALSSLTFASDGPNLYLSLLFAITIFAASLLLQKRKALAITLIAMIMVIYQHFVGSLLDFSSLNNIGQSALL
AFLFWVVYGSGRIAVRRFQILENLNFSQSLELNRLQNINRYILEQTEMGYLVLDENCYVVLSNPAACHLLGIHPKYAHAT
YPLYKIQPDLFDLFKFDQLQDGEKFQFESQLSHFHVHIQVQKLKVPHQTLTLLALQDGRKINQQVQQLKLAALGQLSASI
AHEIRNPLAAIVQANNLFTGSDAAQQQLLSDMISKQATRIDKIIHDTLSMVKNKQTTPVAIQLNQFLPQFIQEDLPDAAS
QIQLTLTEPLSIQFDESQFRQVLINLIRNAIRHNAAQQPIEITVYPKATYIYIDVRDFGAGVASQDLLYLFQPFFSTEIN
GTGLGLYLSHSFCEANQAKLSYVEQEQGACFRMKCLRAIE

Nucleotide


Download         Length: 1563 bp        

>NTDB_id=400653 GJD93_RS13420 WP_154321148.1 2558114..2559676(+) (pilS) [Acinetobacter towneri strain 19110F47]
ATGCCAGATTTAAAACAACATTCTGAGTTAAATCAGTATCATCTTGGCATGTGGTATGGTACTTACCGACTGCTGATTGC
CTTTTGTTTGCTGCTGATTACCCTACTCACCTTTCAGCAGCTTGGCACACAATATCAGCACCCGGGTTTATATCTATACA
CCTTGGTCTGCTATTTTATTTTTAGCTGCCTGCAACTGATCAGCTATAAATATATTCCTTTTAAAAGCACGCAACAACTG
ACCCTGTTTTTTGCAGTCGATATTATCGCGCTCAGTAGCCTGACTTTTGCCAGCGATGGCCCTAATTTATATTTAAGTCT
GCTGTTTGCGATCACGATTTTTGCAGCATCACTCTTGCTGCAAAAGCGTAAAGCCTTAGCCATTACCCTCATCGCGATGA
TTATGGTGATTTACCAACACTTTGTTGGGAGTTTGCTGGACTTTTCATCGCTAAATAATATTGGTCAAAGTGCGCTATTG
GCATTTTTATTTTGGGTGGTTTATGGCAGTGGACGTATTGCAGTACGGCGTTTCCAAATTTTAGAAAATCTAAATTTTTC
GCAATCTTTGGAATTAAACCGCCTACAAAATATCAACCGTTATATTTTAGAACAAACCGAAATGGGCTATTTGGTTTTAG
ATGAAAATTGCTATGTCGTCCTCAGCAACCCTGCAGCCTGTCATCTGTTGGGGATTCATCCTAAATATGCGCACGCGACC
TATCCATTGTATAAAATTCAGCCCGATTTATTTGATCTGTTCAAATTTGATCAATTGCAAGATGGAGAAAAATTTCAATT
CGAGTCGCAACTGAGTCATTTTCATGTGCATATTCAGGTACAAAAACTCAAAGTGCCACATCAAACGCTGACTTTATTGG
CGCTGCAGGATGGACGTAAAATCAATCAGCAAGTCCAGCAACTCAAATTAGCCGCCTTAGGACAACTCTCTGCCAGTATT
GCGCACGAAATTCGCAACCCGTTGGCAGCCATTGTACAAGCCAACAATTTATTTACAGGCAGTGATGCTGCACAGCAACA
ATTGCTGTCGGACATGATCAGCAAACAAGCGACACGGATTGATAAGATTATTCACGACACGCTGAGTATGGTCAAAAATA
AACAAACCACGCCTGTCGCAATTCAGCTCAATCAATTTTTGCCACAATTCATTCAGGAAGATTTACCTGATGCAGCGAGT
CAAATTCAGCTTACACTGACCGAACCACTGAGCATCCAGTTTGATGAATCACAGTTTCGCCAAGTGCTGATTAACCTGAT
TCGTAACGCCATTCGACACAATGCTGCACAACAACCTATTGAGATTACGGTCTATCCGAAAGCAACTTATATTTATATTG
ATGTGCGGGATTTTGGTGCAGGTGTCGCCAGTCAAGATCTCCTCTATCTGTTCCAGCCATTTTTCAGTACCGAAATCAAT
GGAACTGGTTTAGGATTGTATCTATCGCATAGTTTTTGCGAGGCGAATCAAGCCAAGCTGAGCTATGTAGAACAAGAACA
AGGCGCATGTTTCAGGATGAAATGTCTACGTGCCATTGAATAA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(312-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(415-514)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Acinetobacter baumannii strain A118

59.208

97.115

0.575

Multiple sequence alignment