Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   GJS33_RS01795 Genome accession   NZ_CP046041
Coordinates   357896..358384 (+) Length   162 a.a.
NCBI ID   WP_111689845.1    Uniprot ID   -
Organism   Streptococcus equi subsp. zooepidemicus strain AZ-45470     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 352896..363384
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS33_RS09900 - 353990..354274 (-) 285 WP_228269154.1 hypothetical protein -
  GJS33_RS01785 (GJS33_01785) mutY 355060..356208 (-) 1149 WP_111692188.1 A/G-specific adenine glycosylase -
  GJS33_RS01790 (GJS33_01790) rpsF 357587..357877 (+) 291 WP_012514997.1 30S ribosomal protein S6 -
  GJS33_RS01795 (GJS33_01795) ssb 357896..358384 (+) 489 WP_111689845.1 single-stranded DNA-binding protein Machinery gene
  GJS33_RS01800 (GJS33_01800) rpsR 358544..358783 (+) 240 WP_002983142.1 30S ribosomal protein S18 -
  GJS33_RS01805 (GJS33_01805) - 359048..359698 (-) 651 WP_111692189.1 DUF1129 domain-containing protein -
  GJS33_RS01810 (GJS33_01810) - 359950..360894 (-) 945 WP_014622324.1 magnesium transporter CorA family protein -

Sequence

Protein


Download         Length: 162 a.a.        Molecular weight: 17795.63 Da        Isoelectric Point: 4.9008

>NTDB_id=400511 GJS33_RS01795 WP_111689845.1 357896..358384(+) (ssb) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
MINNVVLVGRMTKDAELRYTPSQVAVATFTLAVNRAFKSQNGEREADFINCVIWRQQAENLANWAKKGALIGITGRIQTR
NYENQQGQRVYVTEVVADNFQMLESRATREASSSGSYGGGFNGSPTANSYSAPTQQTPNFGRDESPFGGSNPMDISDDDL
PF

Nucleotide


Download         Length: 489 bp        

>NTDB_id=400511 GJS33_RS01795 WP_111689845.1 357896..358384(+) (ssb) [Streptococcus equi subsp. zooepidemicus strain AZ-45470]
ATGATTAATAATGTAGTACTAGTTGGTCGTATGACCAAGGACGCAGAGCTTCGATACACTCCAAGTCAGGTGGCAGTTGC
TACGTTTACACTTGCTGTTAATCGCGCCTTTAAGAGCCAAAATGGTGAGCGCGAGGCAGATTTCATTAATTGTGTGATCT
GGCGGCAGCAGGCTGAAAATTTAGCTAACTGGGCTAAAAAGGGTGCCTTGATTGGGATTACAGGACGTATTCAGACCCGT
AACTACGAAAACCAACAGGGGCAGCGTGTGTATGTAACCGAGGTTGTTGCAGATAATTTCCAAATGCTGGAAAGTCGTGC
TACACGTGAGGCGAGCTCGTCTGGCTCATATGGTGGTGGCTTTAATGGCTCACCGACAGCCAATAGCTATTCAGCGCCTA
CTCAGCAAACACCTAACTTTGGTAGAGATGAAAGTCCATTTGGCGGCTCAAACCCAATGGACATTTCAGATGACGATCTT
CCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.605
  ssbA Bacillus subtilis subsp. subtilis str. 168

54.651

100

0.58
  ssbB Bacillus subtilis subsp. subtilis str. 168

54.464

69.136

0.377

Multiple sequence alignment