Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilR   Type   Regulator
Locus tag   POR16_RS21020 Genome accession   NZ_CP046035
Coordinates   4657420..4658760 (+) Length   446 a.a.
NCBI ID   WP_005895276.1    Uniprot ID   A0AA40P3I4
Organism   Pseudomonas coronafaciens pv. oryzae str. 1_6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4652420..4663760
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POR16_RS20995 (POR16_20995) pgeF 4652598..4653326 (-) 729 WP_005895288.1 peptidoglycan editing factor PgeF -
  POR16_RS21000 (POR16_21000) rluD 4653323..4654285 (-) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  POR16_RS21005 (POR16_21005) - 4654435..4655457 (+) 1023 WP_005895284.1 outer membrane protein assembly factor BamD -
  POR16_RS21010 (POR16_21010) - 4655596..4655835 (+) 240 WP_054997897.1 PP0621 family protein -
  POR16_RS21015 (POR16_21015) pilS 4655825..4657417 (+) 1593 WP_005895278.1 two-component system sensor histidine kinase NtrB Regulator
  POR16_RS21020 (POR16_21020) pilR 4657420..4658760 (+) 1341 WP_005895276.1 sigma-54-dependent transcriptional regulator Regulator
  POR16_RS21025 (POR16_21025) - 4658922..4659539 (+) 618 WP_005895274.1 TetR/AcrR family transcriptional regulator -
  POR16_RS21030 (POR16_21030) - 4659621..4660736 (+) 1116 WP_005895271.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 446 a.a.        Molecular weight: 49923.95 Da        Isoelectric Point: 6.4396

>NTDB_id=400395 POR16_RS21020 WP_005895276.1 4657420..4658760(+) (pilR) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MSQRQKILIVDDEPDIRELLEITLGRMKLDTRSARNVAEAHEWLAREPFDMCLTDMRLPDGNGLELVQHIQQGYPQVPVA
MITAHGNLDTAIHALKAGAFDFVTKPVDLNRLRELVNSALSLPSSPPPVRSVDSRLLGESPPMRSLRTQIGKLARSQAPI
YISGESGSGKELVARLIHEQGPRNEKPFVPVNCGAIPSELMESEFFGHRKGSFSGAHEDKPGLFQAAHNGTLFLDEVADL
PLAMQVKLLRAIQEKSIRSVGGQQEQVVDVRILCATHKDLAVEVAAGRFRQDLYYRLNVIELRVPSLRERREDIDQLAAS
VLRRLAGNGAQPVARLHAQALETLKSYRFPGNVRELENMLERAYTLCENDEIHASDLRLAECASSQEQNGPSLADIDNLE
DYLESIERKLILQALEETRWNRTAAADRLSLSFRSLRYRLKKLGLD

Nucleotide


Download         Length: 1341 bp        

>NTDB_id=400395 POR16_RS21020 WP_005895276.1 4657420..4658760(+) (pilR) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
ATGAGCCAACGGCAAAAGATTCTGATCGTCGACGATGAGCCGGATATTCGTGAACTCCTGGAGATCACCCTGGGGCGCAT
GAAGCTCGATACCCGCAGCGCTCGCAATGTTGCCGAAGCGCACGAATGGCTGGCGCGTGAGCCGTTCGACATGTGCCTGA
CCGACATGCGCCTGCCTGACGGCAATGGCCTTGAACTGGTGCAGCATATACAGCAAGGCTACCCGCAGGTGCCCGTGGCA
ATGATCACGGCTCACGGCAACCTCGACACGGCCATCCATGCGCTCAAGGCCGGAGCTTTTGATTTTGTCACCAAACCTGT
CGACCTCAACCGACTGCGTGAGCTGGTCAACAGCGCCCTGAGCCTGCCTTCCAGCCCGCCACCGGTGCGCAGTGTCGACA
GCCGCCTGTTGGGCGAGTCGCCACCGATGCGCAGTCTGCGCACGCAAATCGGCAAGCTGGCACGCAGTCAGGCACCGATC
TACATCAGTGGCGAATCGGGCAGCGGCAAGGAACTGGTCGCGCGACTGATCCATGAACAGGGTCCGCGCAACGAAAAACC
CTTCGTCCCGGTAAACTGCGGTGCCATTCCTTCAGAACTGATGGAAAGCGAATTTTTCGGTCATCGCAAAGGCAGCTTCA
GCGGCGCCCACGAAGACAAACCTGGCCTGTTTCAGGCGGCCCATAACGGTACGTTGTTTCTTGATGAGGTCGCCGACCTG
CCGTTGGCCATGCAGGTAAAGTTGCTGCGGGCGATTCAGGAAAAATCCATCCGCAGCGTCGGCGGTCAGCAGGAGCAAGT
AGTGGATGTGCGCATCCTGTGCGCCACTCATAAAGACCTGGCTGTAGAGGTCGCCGCAGGCAGGTTTCGTCAGGATCTGT
ATTACCGATTGAATGTGATCGAGCTGCGCGTGCCCTCATTGCGCGAGCGACGTGAGGACATCGACCAGTTGGCAGCCAGT
GTTTTGCGACGACTGGCTGGCAACGGCGCTCAGCCAGTTGCGCGCCTGCACGCGCAGGCGCTGGAAACGCTGAAAAGCTA
TCGATTCCCCGGTAACGTGCGCGAACTGGAGAACATGCTGGAGCGCGCATACACCTTGTGTGAAAACGATGAAATCCATG
CCAGCGACCTGCGCCTGGCCGAATGCGCCAGCTCCCAGGAACAAAATGGCCCGAGCCTGGCCGACATCGACAACCTTGAA
GACTACCTGGAAAGCATCGAGCGGAAACTCATTCTGCAAGCCCTGGAAGAAACCCGCTGGAACCGCACTGCAGCGGCGGA
CAGGCTCAGTCTGTCTTTCAGGTCGCTGCGTTACCGACTGAAGAAGCTGGGGCTGGATTGA

Domains

Predicted by InterproScan.

Sigma-54 interaction domain (Sigma54_activat)

(136-302)

Bacterial regulatory protein, Fis family (HTH_8)

(403-443)

Response regulator receiver domain (Response_reg)

(7-116)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilR Pseudomonas aeruginosa PAK

79.458

99.327

0.789
  pilR Acinetobacter baumannii strain A118

48.812

100

0.507

Multiple sequence alignment