Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   POR16_RS21015 Genome accession   NZ_CP046035
Coordinates   4655825..4657417 (+) Length   530 a.a.
NCBI ID   WP_005895278.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens pv. oryzae str. 1_6     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4650825..4662417
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POR16_RS20995 (POR16_20995) pgeF 4652598..4653326 (-) 729 WP_005895288.1 peptidoglycan editing factor PgeF -
  POR16_RS21000 (POR16_21000) rluD 4653323..4654285 (-) 963 WP_005895286.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  POR16_RS21005 (POR16_21005) - 4654435..4655457 (+) 1023 WP_005895284.1 outer membrane protein assembly factor BamD -
  POR16_RS21010 (POR16_21010) - 4655596..4655835 (+) 240 WP_054997897.1 PP0621 family protein -
  POR16_RS21015 (POR16_21015) pilS 4655825..4657417 (+) 1593 WP_005895278.1 two-component system sensor histidine kinase NtrB Regulator
  POR16_RS21020 (POR16_21020) pilR 4657420..4658760 (+) 1341 WP_005895276.1 sigma-54-dependent transcriptional regulator Regulator
  POR16_RS21025 (POR16_21025) - 4658922..4659539 (+) 618 WP_005895274.1 TetR/AcrR family transcriptional regulator -
  POR16_RS21030 (POR16_21030) - 4659621..4660736 (+) 1116 WP_005895271.1 efflux RND transporter periplasmic adaptor subunit -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58376.45 Da        Isoelectric Point: 7.1349

>NTDB_id=400394 POR16_RS21015 WP_005895278.1 4655825..4657417(+) (pilS) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MTADTPYLASPQAQRILRLYHLYRLTIGVVLVLLISTSMETELLQLANPNLFRAGCWLYLVFNILVVVLLERPTRQAQLF
SLAMTDAIMLSGLFYAAGGPSSGIGNLLIASVAISNVLLRGRIGLLIAAISAIGIIYLTFYISFGTPSVSNDYVQAGSLG
ALCFAAALLVQALTARMQVSEGLAEQRAADVDSLEELNALILQRMRTGILVLDARRQVLLANQGALTLLGHERLVGQVID
AYSPQLVDRLRQWLINPIMVPRSISVSAIGPELQPSFAALNRGDQRQTLIFLEDLSQIAHQAQQLKLAALGRLTAGIAHE
IRNPLGAVSHAAQLLNESEELSTPDRRLAQIIHDQSQRIDRVIENVLQLSRRREAKPDLLDLSVWLERFVSDLRASVPPD
QTIHVETGPGVLTTRMDAEQLTQVMTNLVQNGLRYSRQNHAYAQVWLKLHHDPKSALPVLEVLDDGPGVSEQHLSKIFEP
FFTTESKGTGLGLYLSRELCESNRAHLEYVSRQSGGSCLRITFAHPFKTS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=400394 POR16_RS21015 WP_005895278.1 4655825..4657417(+) (pilS) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
GTGACCGCTGATACGCCTTACCTTGCCAGCCCACAGGCGCAACGGATTCTGCGGCTGTATCACCTTTATCGACTGACCAT
CGGCGTCGTCCTGGTGTTGCTCATTTCCACAAGCATGGAGACCGAGCTTCTACAGTTGGCCAACCCGAACCTGTTCCGGG
CAGGTTGCTGGCTGTATCTGGTGTTCAACATTCTGGTCGTGGTGCTACTGGAACGCCCTACGCGCCAGGCTCAGCTGTTC
AGCCTGGCCATGACCGACGCAATCATGCTCTCAGGCCTGTTCTATGCGGCGGGCGGCCCTTCCAGTGGTATCGGCAATCT
GCTGATTGCTTCGGTGGCCATCAGCAACGTGCTGTTGCGCGGTCGCATCGGTCTGCTGATCGCCGCCATATCGGCCATCG
GCATCATTTACCTGACGTTCTATATCAGCTTCGGCACACCCTCGGTTTCCAATGATTACGTGCAAGCGGGGTCCTTGGGC
GCTTTGTGCTTTGCTGCTGCGTTGCTGGTGCAGGCGCTGACGGCACGCATGCAGGTCAGCGAGGGGCTGGCCGAACAAAG
GGCCGCAGATGTCGACAGCCTTGAAGAACTCAACGCGCTCATCCTGCAACGCATGCGCACCGGCATTCTGGTGCTGGACG
CCCGCCGCCAGGTGCTGCTGGCCAATCAGGGCGCGCTGACCCTGCTGGGCCACGAGCGGCTGGTCGGTCAGGTCATCGAC
GCTTATTCGCCGCAGCTGGTGGATCGCCTTCGGCAGTGGCTGATCAATCCGATCATGGTGCCACGCAGTATCAGTGTCTC
GGCGATCGGCCCGGAGCTGCAGCCGAGTTTTGCCGCACTCAATCGTGGCGATCAGCGCCAGACGCTGATCTTTCTCGAAG
ACCTGTCGCAGATTGCTCACCAGGCACAGCAGCTCAAACTGGCAGCGCTCGGCCGTCTGACTGCCGGGATTGCCCATGAA
ATCCGCAACCCCTTGGGGGCTGTCAGCCATGCGGCGCAGTTACTCAACGAATCGGAAGAGCTCAGCACGCCGGATCGCCG
CCTGGCGCAGATCATTCACGACCAGTCGCAGCGCATTGACCGGGTGATTGAAAACGTACTGCAACTGTCCCGACGACGCG
AGGCGAAACCGGACCTGCTGGACCTCAGCGTCTGGCTTGAAAGATTTGTCAGCGACCTTCGCGCCTCTGTCCCGCCCGAT
CAGACTATCCATGTGGAAACAGGTCCAGGCGTGCTGACCACCCGCATGGACGCGGAGCAATTGACTCAGGTCATGACTAA
CCTGGTGCAGAACGGCCTACGCTACAGCCGCCAAAATCATGCGTACGCGCAGGTCTGGCTGAAGCTGCACCATGATCCGA
AAAGCGCCCTGCCCGTTCTGGAAGTGCTGGATGATGGTCCGGGCGTCAGTGAGCAGCACCTGAGCAAGATTTTCGAACCG
TTTTTCACGACTGAAAGCAAAGGCACCGGCCTGGGTCTATACCTTTCCCGAGAGTTATGCGAAAGCAATCGGGCGCATTT
GGAATACGTCTCCCGACAAAGCGGTGGCAGTTGTTTGCGCATCACCTTCGCCCACCCGTTCAAAACGAGTTGA

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

61.959

100

0.621

Multiple sequence alignment