Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   POR16_RS16615 Genome accession   NZ_CP046035
Coordinates   3727093..3729309 (-) Length   738 a.a.
NCBI ID   WP_053932356.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens pv. oryzae str. 1_6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3722093..3734309
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POR16_RS16585 (POR16_16585) murB 3722893..3723912 (-) 1020 WP_005892222.1 UDP-N-acetylmuramate dehydrogenase -
  POR16_RS16590 (POR16_16590) kdsB 3723947..3724711 (-) 765 WP_005892221.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  POR16_RS16595 (POR16_16595) - 3724708..3724893 (-) 186 WP_005892220.1 Trm112 family protein -
  POR16_RS16600 (POR16_16600) lpxK 3724911..3725906 (-) 996 WP_005892219.1 tetraacyldisaccharide 4'-kinase -
  POR16_RS16605 (POR16_16605) - 3725906..3726337 (-) 432 WP_005892218.1 ExbD/TolR family protein -
  POR16_RS16610 (POR16_16610) exbB 3726334..3727050 (-) 717 WP_080267902.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  POR16_RS16615 (POR16_16615) comA 3727093..3729309 (-) 2217 WP_053932356.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  POR16_RS16620 (POR16_16620) - 3729446..3730234 (-) 789 WP_005892215.1 ABC transporter permease -
  POR16_RS16625 (POR16_16625) - 3730231..3731163 (-) 933 WP_005892214.1 ABC transporter ATP-binding protein -
  POR16_RS16630 (POR16_16630) - 3731343..3731966 (-) 624 WP_005892213.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 738 a.a.        Molecular weight: 80746.09 Da        Isoelectric Point: 10.2250

>NTDB_id=400385 POR16_RS16615 WP_053932356.1 3727093..3729309(-) (comA) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MRTGMIALALGLVALRFLPVLPPIWLLLLMPILALMLLPFRTYPMAFFLVGFTWACVSAQWALNDRLLHRFDGQTLWVQG
NVVGLPSVAEGVVRFELEDARSRRAKLPARIRVAWYGGPDVKSGERWRLALKLKRPGGLVNPDAFDYQAWLLARRIGATG
TVADGQLLTPARGAWRDGIRQRLLAVDAQGREGGLAALVLGDGSGLSRTDWQVLQNTGTVHLLVISGQHIGLLAGVVYAL
IAGLARWGLWPRALPWLPTACALAFVAALGYGLLAGFEVPVRRACVMVGMVLLWRLRFRHLGVVWPLLLSFCAVLIFEPL
VTLQPGFWLSFAAVGILILIFSGRLGAWQWWQSWTRAQWLIAIGLLPILLALNLPISLSGPFANLLAVPWVSVIVLPLAL
IGTLLLPVPVVGEGLLWLAGGALEWLFVFLGWVADVLPAWLPSAVPVWAWLISLLGAFVLLLPRGVPMRPLGWPLLLLCV
FPPITPVPMGRVEVLQLDVGQGLSILLRTRNHTLLYDAGPRFGEFDIGERVVVPAIRKSGVRHLDLMLISHADADHAGGA
LAVHRAFPVNRVSGGEVARLTPQLDAGLCENGERWEWDGVVFTTWRWEEAPDGNAGSCILSVEANGERLLLTGDIDVHAE
RAAMGSGFDLRAHWLQAPHHGSRSSSSKRFLQAVAPVGVLISRGHNNAFGHPHPLVMARYRWLGIASYDSAELGAVSLQL
GAFGTPQGERAQRRFWRD

Nucleotide


Download         Length: 2217 bp        

>NTDB_id=400385 POR16_RS16615 WP_053932356.1 3727093..3729309(-) (comA) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
ATGCGCACAGGGATGATCGCGCTTGCGCTGGGGCTTGTTGCCCTGCGTTTTCTGCCGGTATTGCCGCCGATCTGGCTATT
GCTGCTGATGCCGATACTGGCGTTGATGCTGCTGCCGTTTCGTACTTATCCAATGGCGTTTTTTCTGGTCGGCTTCACGT
GGGCGTGCGTGTCGGCGCAGTGGGCGCTGAATGATCGCCTGCTGCATCGGTTTGACGGCCAGACGCTGTGGGTGCAGGGC
AACGTCGTCGGGTTGCCGAGTGTTGCAGAAGGCGTGGTGCGTTTCGAACTGGAGGATGCGCGCTCGCGGCGCGCGAAGCT
GCCTGCGCGTATTCGCGTGGCCTGGTACGGCGGCCCCGATGTCAAAAGCGGCGAGCGCTGGCGTCTGGCCCTCAAACTCA
AGCGTCCGGGCGGGCTGGTCAACCCGGATGCCTTCGATTATCAGGCCTGGCTACTGGCCCGGCGCATCGGCGCGACCGGT
ACTGTGGCAGACGGTCAATTGCTGACGCCAGCGCGCGGGGCCTGGCGCGATGGCATTCGTCAGCGGTTGCTGGCGGTCGA
TGCGCAGGGCAGGGAAGGCGGTCTGGCGGCGCTGGTGCTGGGCGACGGCTCGGGCCTGTCGCGCACTGACTGGCAAGTGC
TGCAAAACACCGGCACGGTCCACCTGCTGGTCATTTCCGGTCAGCATATCGGTCTGCTGGCAGGGGTGGTCTATGCGTTG
ATTGCAGGTCTGGCACGTTGGGGGCTATGGCCACGGGCGTTGCCCTGGCTGCCGACGGCGTGTGCATTGGCGTTTGTCGC
GGCGCTGGGCTACGGGCTGCTGGCTGGCTTCGAAGTCCCGGTCCGACGTGCCTGCGTGATGGTGGGCATGGTGTTGCTGT
GGCGCTTGCGCTTTCGGCACCTGGGCGTTGTCTGGCCACTCCTATTGTCATTCTGCGCGGTGCTGATCTTTGAGCCGTTG
GTAACCCTGCAGCCTGGTTTTTGGCTGTCATTCGCGGCAGTGGGCATTCTGATCCTGATCTTCAGTGGTCGTCTCGGCGC
CTGGCAGTGGTGGCAAAGCTGGACGCGCGCGCAATGGTTGATCGCCATTGGCCTGCTGCCGATACTGCTGGCGCTGAACC
TGCCGATCAGCCTGAGTGGTCCGTTTGCCAATTTGCTCGCTGTACCCTGGGTGAGCGTCATCGTCTTGCCGCTGGCACTG
ATCGGCACCTTGCTGCTGCCGGTTCCGGTGGTGGGTGAAGGCCTGCTGTGGCTGGCGGGCGGCGCTCTGGAGTGGCTGTT
CGTGTTTCTCGGCTGGGTGGCCGACGTCCTGCCCGCCTGGCTGCCCAGTGCGGTGCCCGTTTGGGCATGGCTGATAAGCC
TGCTCGGAGCCTTTGTTTTATTGCTGCCCAGAGGTGTGCCGATGCGCCCCCTGGGCTGGCCTTTGTTGCTGCTATGCGTT
TTTCCGCCCATCACACCGGTACCGATGGGGCGGGTCGAGGTGCTGCAGCTCGATGTCGGGCAGGGCCTGTCGATTCTGCT
GCGCACGCGCAATCACACCCTTTTGTATGACGCAGGGCCACGCTTTGGTGAATTCGATATCGGCGAGCGTGTGGTGGTGC
CCGCCATTCGCAAGAGTGGTGTTCGTCATCTTGATCTGATGCTGATCAGCCATGCCGACGCGGATCATGCTGGCGGCGCC
CTGGCGGTTCATCGGGCCTTCCCGGTGAACCGAGTGTCGGGCGGAGAGGTGGCCAGGCTGACCCCGCAGCTCGACGCCGG
GCTGTGCGAAAACGGCGAACGCTGGGAATGGGACGGCGTCGTGTTCACGACATGGCGCTGGGAGGAGGCCCCCGACGGCA
ACGCGGGCTCCTGCATCCTCAGCGTCGAGGCCAATGGCGAGCGCCTGTTGTTAACGGGCGACATTGATGTACACGCCGAG
CGTGCGGCGATGGGCAGCGGCTTCGACCTGCGCGCCCACTGGTTGCAGGCGCCGCACCACGGCAGCCGCAGTTCTTCCTC
CAAGCGCTTTTTGCAAGCAGTCGCGCCGGTTGGTGTACTGATCTCGCGCGGCCACAACAATGCCTTTGGCCATCCTCATC
CACTGGTCATGGCGCGCTATCGGTGGCTGGGTATCGCCAGTTATGACAGCGCCGAACTGGGCGCTGTCAGCCTGCAACTG
GGTGCATTCGGTACACCACAAGGGGAGCGCGCGCAACGGCGCTTCTGGCGTGATTGA

Domains

Predicted by InterproScan.

Domain of unknown function (DUF4131) (DUF4131)

(22-167)

Metallo-beta-lactamase superfamily (Lactamase_B)

(498-685)

Competence protein (Competence)

(198-464)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Pseudomonas stutzeri DSM 10701

62.709

97.019

0.608
  comA Ralstonia pseudosolanacearum GMI1000

31.915

100

0.366

Multiple sequence alignment