Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   POR16_RS16610 Genome accession   NZ_CP046035
Coordinates   3726334..3727050 (-) Length   238 a.a.
NCBI ID   WP_080267902.1    Uniprot ID   -
Organism   Pseudomonas coronafaciens pv. oryzae str. 1_6     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3721334..3732050
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  POR16_RS16585 (POR16_16585) murB 3722893..3723912 (-) 1020 WP_005892222.1 UDP-N-acetylmuramate dehydrogenase -
  POR16_RS16590 (POR16_16590) kdsB 3723947..3724711 (-) 765 WP_005892221.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  POR16_RS16595 (POR16_16595) - 3724708..3724893 (-) 186 WP_005892220.1 Trm112 family protein -
  POR16_RS16600 (POR16_16600) lpxK 3724911..3725906 (-) 996 WP_005892219.1 tetraacyldisaccharide 4'-kinase -
  POR16_RS16605 (POR16_16605) - 3725906..3726337 (-) 432 WP_005892218.1 ExbD/TolR family protein -
  POR16_RS16610 (POR16_16610) exbB 3726334..3727050 (-) 717 WP_080267902.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  POR16_RS16615 (POR16_16615) comA 3727093..3729309 (-) 2217 WP_053932356.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  POR16_RS16620 (POR16_16620) - 3729446..3730234 (-) 789 WP_005892215.1 ABC transporter permease -
  POR16_RS16625 (POR16_16625) - 3730231..3731163 (-) 933 WP_005892214.1 ABC transporter ATP-binding protein -
  POR16_RS16630 (POR16_16630) - 3731343..3731966 (-) 624 WP_005892213.1 glutathione S-transferase -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 25905.46 Da        Isoelectric Point: 7.9112

>NTDB_id=400384 POR16_RS16610 WP_080267902.1 3726334..3727050(-) (exbB) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
MLEWRQFFEGVITVWELVKSGGWMMLPIILSSIAAVGIIIERLWTLRASRIAPPHLLGQAWQWIQEKKLDNEKLKQLRAD
SPLGEILAAGLTNSRHGREIMKECIEEAAARVIHDLERYLSALGSIAAMAPLLGLLGTVLGMIDIFGSFNSTGATANAGV
LASGISKALICTASGLIVAIPAIFFHRFLQSRVDELVVGMEQQAIRLVEVVQGDRDVDLIDAKIDLKSLARAGGGKKK

Nucleotide


Download         Length: 717 bp        

>NTDB_id=400384 POR16_RS16610 WP_080267902.1 3726334..3727050(-) (exbB) [Pseudomonas coronafaciens pv. oryzae str. 1_6]
ATGCTAGAGTGGCGGCAATTTTTCGAGGGAGTGATCACTGTGTGGGAACTGGTCAAATCGGGCGGCTGGATGATGCTGCC
GATCATTTTAAGCTCCATCGCCGCTGTCGGCATCATTATCGAACGCCTGTGGACGCTGCGCGCCAGCCGGATTGCGCCAC
CGCATCTGTTGGGGCAGGCCTGGCAGTGGATTCAGGAAAAGAAGCTGGACAACGAAAAACTCAAGCAACTGCGCGCAGAT
TCGCCGCTGGGCGAGATCCTGGCTGCCGGTCTGACCAACTCCAGGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGA
GGCCGCCGCTCGCGTCATTCATGACCTGGAGCGCTACCTGAGCGCACTGGGCTCGATCGCCGCGATGGCGCCTCTGCTCG
GTCTGCTGGGCACAGTATTGGGCATGATCGACATTTTCGGCTCGTTCAACAGCACCGGTGCCACAGCCAATGCAGGTGTG
CTGGCGAGTGGTATTTCCAAGGCGCTTATCTGTACTGCGTCGGGCCTTATCGTTGCGATCCCTGCGATCTTCTTTCACCG
CTTTCTGCAAAGCCGTGTCGATGAACTGGTGGTCGGTATGGAGCAGCAAGCAATTCGTCTGGTCGAGGTGGTGCAGGGCG
ACCGTGATGTCGATCTGATCGACGCCAAAATAGACCTCAAATCGCTGGCCAGGGCAGGCGGGGGCAAGAAGAAGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(79-201)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

77.143

88.235

0.681

Multiple sequence alignment