Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   GJU84_RS11430 Genome accession   NZ_CP046028
Coordinates   2317571..2318074 (-) Length   167 a.a.
NCBI ID   WP_037575408.1    Uniprot ID   -
Organism   Staphylococcus chromogenes strain 1401     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2312571..2323074
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJU84_RS11400 (GJU84_11325) - 2313022..2314242 (-) 1221 WP_165885940.1 glycerate kinase -
  GJU84_RS11405 (GJU84_11330) chrA 2314362..2315519 (-) 1158 WP_145401741.1 chromate efflux transporter -
  GJU84_RS11410 (GJU84_11335) - 2315530..2315832 (-) 303 WP_165885941.1 PadR family transcriptional regulator -
  GJU84_RS11415 (GJU84_11340) - 2315994..2316374 (+) 381 WP_145401743.1 DUF1801 domain-containing protein -
  GJU84_RS11420 (GJU84_11345) - 2316465..2317028 (-) 564 WP_145401745.1 type II CAAX endopeptidase family protein -
  GJU84_RS11425 (GJU84_11350) rpsR 2317285..2317527 (-) 243 WP_037565082.1 30S ribosomal protein S18 -
  GJU84_RS11430 (GJU84_11355) ssbA 2317571..2318074 (-) 504 WP_037575408.1 single-stranded DNA-binding protein Machinery gene
  GJU84_RS11435 (GJU84_11360) rpsF 2318098..2318394 (-) 297 WP_037565086.1 30S ribosomal protein S6 -
  GJU84_RS11440 (GJU84_11365) - 2318707..2319342 (+) 636 WP_103158638.1 NAD(P)H-binding protein -
  GJU84_RS11445 (GJU84_11370) - 2320030..2320251 (+) 222 WP_107358760.1 hypothetical protein -
  GJU84_RS11450 (GJU84_11375) ychF 2320361..2321458 (-) 1098 WP_037575402.1 redox-regulated ATPase YchF -
  GJU84_RS11455 (GJU84_11380) - 2321465..2321671 (-) 207 WP_037575399.1 DUF951 domain-containing protein -
  GJU84_RS11460 (GJU84_11385) - 2321707..2322597 (-) 891 WP_107358759.1 mechanosensitive ion channel family protein -

Sequence

Protein


Download         Length: 167 a.a.        Molecular weight: 18556.10 Da        Isoelectric Point: 4.9056

>NTDB_id=400369 GJU84_RS11430 WP_037575408.1 2317571..2318074(-) (ssbA) [Staphylococcus chromogenes strain 1401]
MLNRVVLVGRLTKDPEYRTTPSGVGVATFTLAVNRTFTNNQGEREADFINCVVFRKQAENVSNFLFKGSLAGVDGRLQSR
SYENQEGRRVYVTEVVCDSVQFLEPKSQNQRHSNNQGNDFQSYGQGFGGQQQGQNSSYQNNNSSSNNDNPFANANGPIDI
SDDDLPF

Nucleotide


Download         Length: 504 bp        

>NTDB_id=400369 GJU84_RS11430 WP_037575408.1 2317571..2318074(-) (ssbA) [Staphylococcus chromogenes strain 1401]
ATGCTTAACAGAGTTGTATTAGTAGGTCGATTAACTAAAGATCCAGAATACAGAACGACGCCCTCAGGTGTAGGCGTAGC
GACTTTCACATTAGCTGTGAATCGTACGTTTACAAACAACCAAGGGGAACGTGAAGCAGACTTTATTAACTGTGTTGTTT
TTAGAAAGCAAGCAGAGAACGTGAGCAATTTCTTGTTCAAGGGAAGTCTGGCTGGCGTTGACGGTCGCTTACAATCACGC
AGTTACGAAAACCAAGAAGGCCGACGTGTCTATGTGACGGAGGTCGTTTGTGACAGTGTTCAATTCCTTGAACCGAAATC
ACAAAACCAACGTCATTCGAATAACCAAGGCAATGACTTCCAAAGTTATGGCCAAGGATTCGGTGGACAACAACAAGGTC
AAAATTCGTCATATCAAAATAACAATTCATCATCTAACAATGATAACCCATTTGCGAATGCGAATGGTCCTATCGACATT
AGCGATGATGATTTACCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

65.341

100

0.689
  ssb Latilactobacillus sakei subsp. sakei 23K

57.31

100

0.587
  ssbB Bacillus subtilis subsp. subtilis str. 168

58.182

65.868

0.383

Multiple sequence alignment