Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYF   Type   Machinery gene
Locus tag   SGGBAA2069_RS00780 Genome accession   NC_015215
Coordinates   124655..125122 (+) Length   155 a.a.
NCBI ID   WP_012961330.1    Uniprot ID   A0AA94M0F9
Organism   Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 119655..130122
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  SGGBAA2069_RS00750 (SGGBAA2069_c01050) - 121401..121769 (+) 369 WP_009853228.1 DUF1033 family protein -
  SGGBAA2069_RS00755 (SGGBAA2069_c01060) comYA 121838..122779 (+) 942 WP_012961327.1 competence type IV pilus ATPase ComGA Machinery gene
  SGGBAA2069_RS00760 comYB 122661..123746 (+) 1086 WP_012961328.1 competence type IV pilus assembly protein ComGB Machinery gene
  SGGBAA2069_RS00765 (SGGBAA2069_c01070) comYC 123746..124039 (+) 294 WP_009853231.1 competence type IV pilus major pilin ComGC Machinery gene
  SGGBAA2069_RS00770 (SGGBAA2069_c01080) comYD 124023..124454 (+) 432 WP_009853232.1 competence type IV pilus minor pilin ComGD Machinery gene
  SGGBAA2069_RS00775 (SGGBAA2069_c01090) comGE 124408..124701 (+) 294 WP_012961329.1 competence type IV pilus minor pilin ComGE -
  SGGBAA2069_RS00780 (SGGBAA2069_c01100) comYF 124655..125122 (+) 468 WP_012961330.1 competence type IV pilus minor pilin ComGF Machinery gene
  SGGBAA2069_RS00785 (SGGBAA2069_c01110) comYG 125094..125408 (+) 315 WP_009853235.1 competence type IV pilus minor pilin ComGG Machinery gene
  SGGBAA2069_RS00790 (SGGBAA2069_c01120) comYH 125481..126437 (+) 957 WP_009853236.1 class I SAM-dependent methyltransferase Machinery gene
  SGGBAA2069_RS00795 (SGGBAA2069_c01130) - 126490..127689 (+) 1200 WP_009853237.1 acetate kinase -
  SGGBAA2069_RS00800 (SGGBAA2069_c01140) - 127851..128051 (+) 201 WP_012961332.1 helix-turn-helix transcriptional regulator -
  SGGBAA2069_RS00805 (SGGBAA2069_c01150) - 128061..128270 (+) 210 WP_009853239.1 hypothetical protein -
  SGGBAA2069_RS00810 (SGGBAA2069_c01160) - 128283..128735 (+) 453 WP_009853240.1 hypothetical protein -
  SGGBAA2069_RS00815 (SGGBAA2069_c01170) - 128747..129385 (+) 639 WP_009853241.1 CPBP family intramembrane glutamic endopeptidase -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17515.10 Da        Isoelectric Point: 9.7290

>NTDB_id=40024 SGGBAA2069_RS00780 WP_012961330.1 124655..125122(+) (comYF) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
MFMRGKRKYYTLKKTSLKAFTLIECLVSLLVISGAILVYNALTQSISANVHYLSENQEENWLLFSQQLRAELANCQLDKV
ENNKLYVTKSSQKLAFGQSKADDFRKTNASGQGYQPMIFGVKSSAISRDGQKVTMTLNLENGLERTFVYTFETAS

Nucleotide


Download         Length: 468 bp        

>NTDB_id=40024 SGGBAA2069_RS00780 WP_012961330.1 124655..125122(+) (comYF) [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069]
ATGTTTATGAGGGGAAAACGGAAATATTACACGTTAAAAAAGACTAGTTTAAAGGCATTCACCCTCATAGAATGTTTGGT
TTCTTTATTGGTAATTTCGGGTGCTATTCTTGTTTACAATGCCTTAACGCAATCTATTTCTGCAAATGTGCATTATTTGT
CGGAAAATCAAGAGGAAAACTGGCTTTTGTTTTCACAACAGCTGCGTGCGGAGCTTGCCAATTGTCAATTAGATAAGGTT
GAAAATAACAAGCTATATGTGACGAAGTCCAGTCAAAAGTTGGCATTTGGACAGTCAAAGGCTGATGATTTTCGTAAAAC
AAACGCATCTGGTCAAGGCTATCAGCCAATGATATTTGGAGTAAAATCTTCTGCTATTTCTAGAGATGGTCAGAAGGTGA
CAATGACATTAAATTTAGAGAATGGTTTGGAGAGGACATTTGTTTACACTTTTGAAACGGCAAGTTAA

Domains

Predicted by InterproScan.

Putative Competence protein ComGF (ComGF)

(51-144)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYF Streptococcus mutans UA140

57.554

89.677

0.516
  comYF Streptococcus mutans UA159

56.835

89.677

0.51
  comGF/cglF Streptococcus pneumoniae Rx1

46.429

90.323

0.419
  comGF/cglF Streptococcus pneumoniae D39

46.429

90.323

0.419
  comGF/cglF Streptococcus pneumoniae R6

46.429

90.323

0.419
  comGF/cglF Streptococcus pneumoniae TIGR4

46.429

90.323

0.419
  comGF/cglF Streptococcus mitis NCTC 12261

45.07

91.613

0.413
  comGF/cglF Streptococcus mitis SK321

44.366

91.613

0.406
  comGF Lactococcus lactis subsp. cremoris KW2

43.478

89.032

0.387

Multiple sequence alignment