Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GJS30_RS15985 Genome accession   NZ_CP045993
Coordinates   3263873..3264517 (-) Length   214 a.a.
NCBI ID   WP_003152052.1    Uniprot ID   A3KLB8
Organism   Bacillus velezensis strain LABIM22     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3258873..3269517
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS15950 (GJS30_15895) - 3260058..3260489 (+) 432 WP_007613424.1 Na(+)/H(+) antiporter subunit B -
  GJS30_RS15955 (GJS30_15900) - 3260489..3260830 (+) 342 WP_003152063.1 Na(+)/H(+) antiporter subunit C -
  GJS30_RS15960 (GJS30_15905) - 3260823..3262304 (+) 1482 WP_021495363.1 Na+/H+ antiporter subunit D -
  GJS30_RS15965 (GJS30_15910) - 3262310..3262786 (+) 477 WP_007408672.1 Na+/H+ antiporter subunit E -
  GJS30_RS15970 (GJS30_15915) - 3262786..3263070 (+) 285 WP_003152057.1 Na(+)/H(+) antiporter subunit F1 -
  GJS30_RS15975 (GJS30_15920) mnhG 3263054..3263428 (+) 375 WP_007613429.1 monovalent cation/H(+) antiporter subunit G -
  GJS30_RS15980 (GJS30_15925) - 3263468..3263851 (-) 384 WP_007613430.1 hotdog fold thioesterase -
  GJS30_RS15985 (GJS30_15930) comA 3263873..3264517 (-) 645 WP_003152052.1 response regulator transcription factor Regulator
  GJS30_RS15990 (GJS30_15935) comP 3264598..3266901 (-) 2304 WP_021495364.1 histidine kinase Regulator
  GJS30_RS15995 (GJS30_15945) comQ 3267027..3267986 (-) 960 WP_223204411.1 class 1 isoprenoid biosynthesis enzyme Regulator
  GJS30_RS16000 (GJS30_15950) degQ 3268171..3268311 (-) 141 WP_003152043.1 degradation enzyme regulation protein DegQ Regulator
  GJS30_RS16005 (GJS30_15955) - 3268777..3269118 (+) 342 WP_007613435.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24271.68 Da        Isoelectric Point: 4.9953

>NTDB_id=400081 GJS30_RS15985 WP_003152052.1 3263873..3264517(-) (comA) [Bacillus velezensis strain LABIM22]
MKKILVIDDHPAVMEGTKTILETDTNLSVDCLSPDASEQFVLRHDFSAYDLILMDLNLGDDISGIELSKKILKENPLCKI
IVYTGYEVEDYFEESIRAGLHGAISKTESKEKIMQYIYHVLNGQILVDFSYFKQLMTQQKTKTSSSPQSEQDRLTPRERH
ILQEVEKGLTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDNVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=400081 GJS30_RS15985 WP_003152052.1 3263873..3264517(-) (comA) [Bacillus velezensis strain LABIM22]
ATGAAAAAGATACTAGTGATTGATGATCATCCGGCTGTCATGGAGGGCACCAAGACGATTCTGGAAACGGACACGAATCT
TTCTGTCGATTGCCTCAGTCCTGATGCCAGTGAACAATTTGTTCTCCGGCATGATTTTTCAGCTTACGATCTCATATTAA
TGGATTTAAATCTGGGTGATGACATCAGCGGCATAGAGCTTTCCAAGAAAATCTTAAAAGAGAATCCTCTCTGTAAAATC
ATTGTCTACACAGGCTATGAGGTTGAAGATTATTTTGAAGAATCCATCCGCGCGGGCCTGCATGGCGCCATCAGCAAAAC
TGAATCTAAAGAGAAAATCATGCAATACATATATCACGTGCTCAACGGACAGATTTTAGTTGATTTCTCCTATTTCAAAC
AGCTGATGACCCAGCAAAAAACAAAAACGTCTTCTTCCCCTCAAAGTGAGCAGGATCGGTTAACCCCGAGAGAGCGCCAT
ATTCTCCAAGAGGTCGAAAAAGGTTTGACCAATCAGGAAATCGCAGATGCGCTTCACTTAAGCAAGCGGTCGATTGAATA
CAGCCTGACATCCATTTTTAACAAGCTGAATGTCGGCTCCCGAACTGAAGCGGTGCTGATCGCCAAGTCAGATAACGTAC
TATAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(4-117)

Bacterial regulatory proteins, luxR family (GerE)

(153-208)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A3KLB8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

86.449

100

0.864

Multiple sequence alignment