Detailed information    

insolico Bioinformatically predicted

Overview

Name   sinR   Type   Regulator
Locus tag   GJS30_RS13010 Genome accession   NZ_CP045993
Coordinates   2703030..2703365 (+) Length   111 a.a.
NCBI ID   WP_003153104.1    Uniprot ID   -
Organism   Bacillus velezensis strain LABIM22     
Function   repression of rok; repression of degU; repression of spo0A (predicted from homology)   
Competence regulation

Genomic Context

Location: 2698030..2708365
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJS30_RS12990 (GJS30_12940) gcvT 2698636..2699736 (-) 1101 WP_179156203.1 glycine cleavage system aminomethyltransferase GcvT -
  GJS30_RS12995 (GJS30_12945) - 2700160..2701830 (+) 1671 WP_021494309.1 DEAD/DEAH box helicase -
  GJS30_RS13000 (GJS30_12950) - 2701852..2702646 (+) 795 WP_014418368.1 YqhG family protein -
  GJS30_RS13005 (GJS30_12955) sinI 2702823..2702996 (+) 174 WP_014418369.1 anti-repressor SinI Regulator
  GJS30_RS13010 (GJS30_12960) sinR 2703030..2703365 (+) 336 WP_003153104.1 transcriptional regulator SinR Regulator
  GJS30_RS13015 (GJS30_12965) tasA 2703413..2704198 (-) 786 WP_007408329.1 biofilm matrix protein TasA -
  GJS30_RS13020 (GJS30_12970) sipW 2704263..2704847 (-) 585 WP_012117977.1 signal peptidase I SipW -
  GJS30_RS13025 (GJS30_12975) tapA 2704819..2705490 (-) 672 WP_014418371.1 amyloid fiber anchoring/assembly protein TapA -
  GJS30_RS13030 (GJS30_12980) - 2705749..2706078 (+) 330 WP_012117979.1 DUF3889 domain-containing protein -
  GJS30_RS13035 (GJS30_12985) - 2706119..2706298 (-) 180 WP_003153093.1 YqzE family protein -
  GJS30_RS13040 (GJS30_12990) comGG 2706355..2706732 (-) 378 WP_025649851.1 competence type IV pilus minor pilin ComGG Machinery gene
  GJS30_RS13045 (GJS30_12995) comGF 2706733..2707128 (-) 396 WP_025649850.1 competence type IV pilus minor pilin ComGF -
  GJS30_RS13050 (GJS30_13000) comGE 2707142..2707456 (-) 315 WP_017418140.1 competence type IV pilus minor pilin ComGE Machinery gene
  GJS30_RS13055 (GJS30_13005) comGD 2707440..2707877 (-) 438 WP_007612572.1 competence type IV pilus minor pilin ComGD Machinery gene
  GJS30_RS13060 (GJS30_13010) comGC 2707867..2708175 (-) 309 WP_014418376.1 competence type IV pilus major pilin ComGC Machinery gene

Sequence

Protein


Download         Length: 111 a.a.        Molecular weight: 12972.64 Da        Isoelectric Point: 7.2023

>NTDB_id=400062 GJS30_RS13010 WP_003153104.1 2703030..2703365(+) (sinR) [Bacillus velezensis strain LABIM22]
MIGQRIKQYRKEKGYSLSELAEKAGVAKSYLSSIERNLQTNPSIQFLEKVSAVLDVSVHTLLDEKHETEYDGQLDSEWEK
LVRDAMTSGVSKKQFREFLDYQKWRKAQKEE

Nucleotide


Download         Length: 336 bp        

>NTDB_id=400062 GJS30_RS13010 WP_003153104.1 2703030..2703365(+) (sinR) [Bacillus velezensis strain LABIM22]
TTGATTGGCCAGCGTATTAAACAATACCGAAAAGAAAAAGGCTACTCACTATCAGAACTAGCTGAAAAAGCTGGGGTAGC
GAAGTCTTATTTAAGCTCAATAGAACGAAATTTACAGACGAACCCCTCCATTCAATTTCTCGAAAAAGTCTCCGCTGTTC
TGGACGTCTCGGTTCATACTTTACTTGATGAAAAACATGAAACCGAATACGATGGTCAATTAGATAGTGAATGGGAGAAA
TTAGTTCGCGATGCAATGACATCCGGGGTATCAAAAAAACAATTTCGTGAATTTTTAGATTATCAAAAATGGAGAAAAGC
GCAAAAAGAGGAGTAG

Domains

Predicted by InterproScan.

Helix-turn-helix (HTH_3)

(6-58)

Anti-repressor SinI (SinI)

(74-101)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sinR Bacillus subtilis subsp. subtilis str. 168

99.099

100

0.991

Multiple sequence alignment