Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilK   Type   Machinery gene
Locus tag   GJE04_RS02770 Genome accession   NZ_CP045961
Coordinates   517490..518083 (+) Length   197 a.a.
NCBI ID   WP_002255851.1    Uniprot ID   -
Organism   Neisseria meningitidis strain AUSMDU00010537     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 512490..523083
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE04_RS02745 (GJE04_02745) - 512733..513320 (-) 588 WP_154074380.1 superoxide dismutase -
  GJE04_RS02750 (GJE04_02750) dnaB 513483..514889 (+) 1407 WP_002213843.1 replicative DNA helicase -
  GJE04_RS02755 (GJE04_02755) pilH 515198..515866 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GJE04_RS02760 (GJE04_02760) pilV 515896..516516 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Machinery gene
  GJE04_RS02765 (GJE04_02765) pilJ 516513..517511 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  GJE04_RS02770 (GJE04_02770) pilK 517490..518083 (+) 594 WP_002255851.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GJE04_RS02775 (GJE04_02775) pilX 518088..518561 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  GJE04_RS02780 (GJE04_02780) - 519441..519869 (-) 429 Protein_511 AzlC family ABC transporter permease -
  GJE04_RS02785 (GJE04_02785) dut 520012..520464 (+) 453 WP_002250021.1 dUTP diphosphatase -
  GJE04_RS02790 (GJE04_02790) dapC 520540..521727 (+) 1188 WP_061727608.1 succinyldiaminopimelate transaminase -
  GJE04_RS12380 - 521815..521940 (+) 126 Protein_514 IS5/IS1182 family transposase -
  GJE04_RS02795 (GJE04_02795) yaaA 521989..522768 (+) 780 WP_002235690.1 peroxide stress protein YaaA -

Sequence

Protein


Download         Length: 197 a.a.        Molecular weight: 21512.39 Da        Isoelectric Point: 6.3728

>NTDB_id=399744 GJE04_RS02770 WP_002255851.1 517490..518083(+) (pilK) [Neisseria meningitidis strain AUSMDU00010537]
MRKQNTLTGIPTSDGQRGFALFIVLMVMIVVAFLVVTAAQSYNTEQRISANESDRKLALSLAEAALREGELQVLDLEYDT
DSKVTFSENCGKGLCTAVNVRTNNDNEEAFDNIVVQGKPTVEAVKRSCTAKSTGLCIDNKGMVYGKGTQSVSKPPRYIIE
YLGVKNGENVYRVTAKAWGKNANTVVVLQSYVSNNDE

Nucleotide


Download         Length: 594 bp        

>NTDB_id=399744 GJE04_RS02770 WP_002255851.1 517490..518083(+) (pilK) [Neisseria meningitidis strain AUSMDU00010537]
ATGCGCAAACAGAACACTTTGACGGGAATCCCGACTTCTGACGGACAGAGGGGGTTTGCACTGTTTATCGTGCTGATGGT
GATGATCGTCGTGGCTTTTTTGGTTGTAACTGCCGCGCAGTCTTACAATACCGAGCAGCGGATCAGTGCCAACGAATCAG
ACAGGAAATTGGCTTTGTCTTTGGCCGAGGCGGCTTTGCGGGAAGGCGAACTTCAGGTTTTGGATTTGGAATATGATACG
GACAGTAAGGTTACATTTAGCGAAAACTGTGGAAAAGGTCTGTGTACCGCAGTGAATGTGCGGACAAATAATGATAATGA
AGAGGCTTTTGACAATATCGTGGTGCAAGGCAAGCCCACCGTTGAGGCGGTGAAGCGTTCTTGCACTGCAAAATCTACAG
GCCTGTGCATTGACAATAAAGGGATGGTATATGGGAAAGGCACGCAAAGTGTCAGCAAACCGCCGCGTTATATTATCGAA
TATTTGGGCGTGAAGAACGGAGAAAATGTTTATCGGGTTACTGCCAAGGCTTGGGGTAAGAATGCCAATACCGTGGTCGT
CCTTCAATCTTATGTAAGCAATAATGATGAGTAA

Domains

Predicted by InterProScan.

PilX N-terminal (PilX_N)

(17-67)

Type IV pilus assembly protein PilX C-term (PilX)

(92-192)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilK Neisseria gonorrhoeae MS11

86.634

100

0.888

Multiple sequence alignment