Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   GJE04_RS02755 Genome accession   NZ_CP045961
Coordinates   515198..515866 (+) Length   222 a.a.
NCBI ID   WP_014575282.1    Uniprot ID   -
Organism   Neisseria meningitidis strain AUSMDU00010537     
Function   type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 510198..520866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GJE04_RS02735 (GJE04_02735) - 510988..511320 (+) 333 WP_002226445.1 hypothetical protein -
  GJE04_RS02740 (GJE04_02740) - 511652..512161 (+) 510 WP_002213852.1 isoprenylcysteine carboxyl methyltransferase family protein -
  GJE04_RS02745 (GJE04_02745) - 512733..513320 (-) 588 WP_154074380.1 superoxide dismutase -
  GJE04_RS02750 (GJE04_02750) dnaB 513483..514889 (+) 1407 WP_002213843.1 replicative DNA helicase -
  GJE04_RS02755 (GJE04_02755) pilH 515198..515866 (+) 669 WP_014575282.1 Tfp pilus assembly protein FimT/FimU Machinery gene
  GJE04_RS02760 (GJE04_02760) pilV 515896..516516 (+) 621 WP_154074400.1 type IV pilus modification protein PilV Machinery gene
  GJE04_RS02765 (GJE04_02765) pilJ 516513..517511 (+) 999 WP_154074381.1 PilW family protein Machinery gene
  GJE04_RS02770 (GJE04_02770) pilK 517490..518083 (+) 594 WP_002255851.1 PilX N-terminal domain-containing pilus assembly protein Machinery gene
  GJE04_RS02775 (GJE04_02775) pilX 518088..518561 (+) 474 WP_195183013.1 PilX family type IV pilin Machinery gene
  GJE04_RS02780 (GJE04_02780) - 519441..519869 (-) 429 Protein_511 AzlC family ABC transporter permease -
  GJE04_RS02785 (GJE04_02785) dut 520012..520464 (+) 453 WP_002250021.1 dUTP diphosphatase -

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 24795.30 Da        Isoelectric Point: 9.5822

>NTDB_id=399741 GJE04_RS02755 WP_014575282.1 515198..515866(+) (pilH) [Neisseria meningitidis strain AUSMDU00010537]
MCTRKQQGFTLTELLIVMVIAAIMAMIALPNMSQWIASRRIASHAERIANLLRFSRGEAVRLNLPVYICPVQVKKDGTPN
NKCDSGKKGQGMLAFGDKNGNKGYDNDTADVLLRSVVLNDDINDKRINYAFNHIAFGQTQPTADRVVWTFNQNGTFGYST
NQDLTNTSKFVYSDGYIQIVLTDARAVSDADKKFRSAVVLIDSSGRVEVCPRNDRRTVCQYK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=399741 GJE04_RS02755 WP_014575282.1 515198..515866(+) (pilH) [Neisseria meningitidis strain AUSMDU00010537]
ATGTGTACACGAAAACAACAAGGTTTCACGCTAACAGAGCTGCTCATCGTGATGGTCATTGCAGCCATTATGGCGATGAT
AGCCCTCCCCAATATGAGCCAATGGATTGCATCCCGCCGCATTGCCAGTCACGCGGAGCGGATTGCCAACCTTTTGCGTT
TCTCCAGGGGCGAAGCCGTCCGGCTCAATCTCCCTGTCTATATCTGTCCTGTTCAAGTTAAAAAAGACGGTACGCCCAAC
AATAAATGTGACTCCGGCAAGAAGGGGCAGGGAATGTTGGCTTTCGGCGACAAAAACGGCAATAAGGGATATGACAATGA
TACGGCGGATGTTCTTCTCCGCAGTGTGGTATTGAATGATGATATCAATGATAAGCGGATTAATTATGCCTTCAACCATA
TCGCTTTCGGTCAGACTCAGCCGACCGCTGACCGTGTAGTTTGGACATTCAATCAAAACGGGACGTTCGGTTATTCTACC
AATCAGGATCTCACGAATACTTCCAAATTTGTTTACTCCGACGGTTATATCCAAATCGTGCTGACAGATGCGAGAGCAGT
TTCAGATGCCGATAAGAAATTCCGTTCGGCGGTGGTTTTGATTGACAGCAGCGGCAGGGTTGAGGTTTGTCCTAGAAACG
ATAGGCGTACCGTATGCCAATATAAATGA

Domains

Predicted by InterProScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(4-29)

Type II transport protein GspH (GspH)

(44-204)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Neisseria gonorrhoeae MS11

85.068

99.55

0.847

Multiple sequence alignment