Detailed information
Bioinformatically predicted
Overview
| Name | pilC | Type | Machinery gene |
| Locus tag | DEIPR_RS02325 | Genome accession | NC_015161 |
| Coordinates | 459210..460430 (+) | Length | 406 a.a. |
| NCBI ID | WP_013614227.1 | Uniprot ID | F0RK59 |
| Organism | Deinococcus proteolyticus MRP | ||
| Function | assembly of type IV pilus (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 454210..465430
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| DEIPR_RS02300 (Deipr_0443) | - | 454724..455215 (-) | 492 | WP_041222268.1 | MaoC family dehydratase | - |
| DEIPR_RS02305 (Deipr_0444) | - | 455224..456114 (-) | 891 | WP_013614223.1 | CoA ester lyase | - |
| DEIPR_RS02310 (Deipr_0445) | gatA | 456193..457662 (-) | 1470 | WP_013614224.1 | Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA | - |
| DEIPR_RS02315 (Deipr_0446) | scpB | 457861..458409 (-) | 549 | WP_041221900.1 | SMC-Scp complex subunit ScpB | - |
| DEIPR_RS02320 (Deipr_0447) | - | 458483..459118 (-) | 636 | WP_083801571.1 | L-threonylcarbamoyladenylate synthase | - |
| DEIPR_RS02325 (Deipr_0448) | pilC | 459210..460430 (+) | 1221 | WP_013614227.1 | type II secretion system F family protein | Machinery gene |
| DEIPR_RS02330 (Deipr_0449) | - | 460638..461720 (+) | 1083 | WP_245532712.1 | PP2C family serine/threonine-protein phosphatase | - |
| DEIPR_RS02335 (Deipr_0450) | - | 461793..462170 (+) | 378 | WP_013614229.1 | RidA family protein | - |
| DEIPR_RS02340 (Deipr_0451) | - | 462316..463203 (-) | 888 | WP_013614230.1 | hypothetical protein | - |
| DEIPR_RS02345 (Deipr_0452) | aguB | 463357..464256 (-) | 900 | WP_013614231.1 | N-carbamoylputrescine amidase | - |
| DEIPR_RS02350 (Deipr_0453) | rocF | 464363..465262 (-) | 900 | WP_013614232.1 | arginase | - |
Sequence
Protein
Download Length: 406 a.a. Molecular weight: 44467.35 Da Isoelectric Point: 7.2068
>NTDB_id=39910 DEIPR_RS02325 WP_013614227.1 459210..460430(+) (pilC) [Deinococcus proteolyticus MRP]
MAVYQYRVRDGSGKILTSQMEADSIGQVREALRSRKLTILDIKEPASGLNADIKIPGLDNRPPDLKTVALFSRQMATLIN
AGVPLVQALFIMQKQIEHKSFQEVVRKVRIDVEGGLPLSEAMAKHPKAFNRLYLNLVRAGETSGTLELILGRIADFQEKD
LALRGKVKKALTYPTIVLVFALLITWGLIRFVVPTFGDILTSMNTELPIITRMLMSMSAFLQSYTWVLVLIAGILYAAYR
WYYSTAQGRRVIDQIKLKMPLLGPLTRKGAIASFSRTLGMLLSSGVNIIESLDITKGTADNAIIEEAIENGKNVVTVGEP
LSGSLAASPVFPPMVTSMVAIGEETGALDDMLEKVADFYDREVEEAVDSLTAAIEPIMIVALGGIVLFIVLGMFTPMFSI
INTLSV
MAVYQYRVRDGSGKILTSQMEADSIGQVREALRSRKLTILDIKEPASGLNADIKIPGLDNRPPDLKTVALFSRQMATLIN
AGVPLVQALFIMQKQIEHKSFQEVVRKVRIDVEGGLPLSEAMAKHPKAFNRLYLNLVRAGETSGTLELILGRIADFQEKD
LALRGKVKKALTYPTIVLVFALLITWGLIRFVVPTFGDILTSMNTELPIITRMLMSMSAFLQSYTWVLVLIAGILYAAYR
WYYSTAQGRRVIDQIKLKMPLLGPLTRKGAIASFSRTLGMLLSSGVNIIESLDITKGTADNAIIEEAIENGKNVVTVGEP
LSGSLAASPVFPPMVTSMVAIGEETGALDDMLEKVADFYDREVEEAVDSLTAAIEPIMIVALGGIVLFIVLGMFTPMFSI
INTLSV
Nucleotide
Download Length: 1221 bp
>NTDB_id=39910 DEIPR_RS02325 WP_013614227.1 459210..460430(+) (pilC) [Deinococcus proteolyticus MRP]
ATGGCGGTTTATCAGTACAGGGTGCGCGACGGCTCAGGCAAAATCCTGACCTCGCAGATGGAAGCGGACAGCATCGGGCA
GGTCCGCGAAGCGCTGCGGTCGCGTAAGCTGACGATTCTTGATATTAAGGAGCCGGCCAGCGGACTGAACGCCGATATCA
AGATTCCCGGCCTGGACAACCGGCCCCCTGACCTCAAGACGGTGGCGCTGTTCAGCCGCCAGATGGCCACCCTCATTAAC
GCCGGTGTGCCGCTGGTCCAGGCGCTGTTCATCATGCAAAAGCAGATTGAACACAAGAGCTTTCAGGAGGTTGTCCGCAA
GGTGCGCATAGACGTGGAAGGCGGCCTGCCGCTCAGCGAGGCGATGGCCAAGCACCCCAAGGCCTTCAACCGCCTCTACC
TGAACCTGGTGCGGGCCGGCGAAACCTCGGGCACGCTGGAGCTGATTCTGGGCCGCATCGCGGATTTCCAGGAAAAGGAC
CTGGCGCTGCGCGGCAAGGTGAAAAAGGCGCTGACCTACCCCACCATCGTGCTGGTCTTCGCCCTGCTGATCACCTGGGG
CCTGATCCGTTTCGTGGTGCCCACTTTCGGTGACATCCTCACCTCCATGAATACCGAGCTGCCCATCATCACCCGCATGC
TGATGAGCATGTCGGCTTTCCTGCAGAGCTATACCTGGGTGCTGGTGCTGATTGCGGGCATCCTCTACGCGGCTTACCGC
TGGTATTACTCCACCGCGCAGGGCCGGCGCGTGATTGATCAGATTAAGCTCAAGATGCCGCTGCTGGGACCACTGACCCG
CAAAGGCGCCATCGCTTCGTTCAGCCGCACGCTCGGCATGCTGCTTAGCAGCGGGGTGAACATCATCGAGTCGCTGGACA
TCACCAAGGGCACGGCCGATAACGCCATCATCGAAGAGGCCATCGAAAACGGCAAGAACGTGGTGACGGTGGGCGAGCCG
CTGAGCGGCAGCCTGGCGGCCAGCCCCGTGTTCCCCCCCATGGTGACCAGCATGGTAGCGATTGGCGAGGAGACCGGCGC
ACTGGACGACATGCTGGAAAAGGTGGCCGACTTTTACGACCGCGAAGTGGAAGAGGCGGTCGACAGCCTGACCGCTGCCA
TCGAGCCGATTATGATTGTGGCGCTCGGCGGCATCGTGCTGTTTATCGTGCTGGGCATGTTCACCCCGATGTTCTCGATT
ATCAACACCCTCAGCGTCTGA
ATGGCGGTTTATCAGTACAGGGTGCGCGACGGCTCAGGCAAAATCCTGACCTCGCAGATGGAAGCGGACAGCATCGGGCA
GGTCCGCGAAGCGCTGCGGTCGCGTAAGCTGACGATTCTTGATATTAAGGAGCCGGCCAGCGGACTGAACGCCGATATCA
AGATTCCCGGCCTGGACAACCGGCCCCCTGACCTCAAGACGGTGGCGCTGTTCAGCCGCCAGATGGCCACCCTCATTAAC
GCCGGTGTGCCGCTGGTCCAGGCGCTGTTCATCATGCAAAAGCAGATTGAACACAAGAGCTTTCAGGAGGTTGTCCGCAA
GGTGCGCATAGACGTGGAAGGCGGCCTGCCGCTCAGCGAGGCGATGGCCAAGCACCCCAAGGCCTTCAACCGCCTCTACC
TGAACCTGGTGCGGGCCGGCGAAACCTCGGGCACGCTGGAGCTGATTCTGGGCCGCATCGCGGATTTCCAGGAAAAGGAC
CTGGCGCTGCGCGGCAAGGTGAAAAAGGCGCTGACCTACCCCACCATCGTGCTGGTCTTCGCCCTGCTGATCACCTGGGG
CCTGATCCGTTTCGTGGTGCCCACTTTCGGTGACATCCTCACCTCCATGAATACCGAGCTGCCCATCATCACCCGCATGC
TGATGAGCATGTCGGCTTTCCTGCAGAGCTATACCTGGGTGCTGGTGCTGATTGCGGGCATCCTCTACGCGGCTTACCGC
TGGTATTACTCCACCGCGCAGGGCCGGCGCGTGATTGATCAGATTAAGCTCAAGATGCCGCTGCTGGGACCACTGACCCG
CAAAGGCGCCATCGCTTCGTTCAGCCGCACGCTCGGCATGCTGCTTAGCAGCGGGGTGAACATCATCGAGTCGCTGGACA
TCACCAAGGGCACGGCCGATAACGCCATCATCGAAGAGGCCATCGAAAACGGCAAGAACGTGGTGACGGTGGGCGAGCCG
CTGAGCGGCAGCCTGGCGGCCAGCCCCGTGTTCCCCCCCATGGTGACCAGCATGGTAGCGATTGGCGAGGAGACCGGCGC
ACTGGACGACATGCTGGAAAAGGTGGCCGACTTTTACGACCGCGAAGTGGAAGAGGCGGTCGACAGCCTGACCGCTGCCA
TCGAGCCGATTATGATTGTGGCGCTCGGCGGCATCGTGCTGTTTATCGTGCTGGGCATGTTCACCCCGATGTTCTCGATT
ATCAACACCCTCAGCGTCTGA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| pilC | Thermus thermophilus HB27 |
57.002 |
100 |
0.571 |
| pilC | Acinetobacter baylyi ADP1 |
37.037 |
99.754 |
0.369 |
| pilG | Neisseria meningitidis 44/76-A |
37 |
98.522 |
0.365 |