Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   GII23_RS20950 Genome accession   NZ_CP045858
Coordinates   4443640..4445232 (+) Length   530 a.a.
NCBI ID   WP_205884937.1    Uniprot ID   -
Organism   Stutzerimonas balearica strain EC28     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 4438640..4450232
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII23_RS20930 (GII23_20865) pgeF 4440494..4441225 (-) 732 WP_165564026.1 peptidoglycan editing factor PgeF -
  GII23_RS20935 (GII23_20870) rluD 4441222..4442196 (-) 975 WP_043218532.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  GII23_RS20940 (GII23_20875) - 4442344..4443336 (+) 993 WP_041107883.1 outer membrane protein assembly factor BamD -
  GII23_RS20945 (GII23_20880) - 4443417..4443650 (+) 234 WP_061340058.1 PP0621 family protein -
  GII23_RS20950 (GII23_20885) pilS 4443640..4445232 (+) 1593 WP_205884937.1 PAS domain-containing sensor histidine kinase Regulator
  GII23_RS20955 (GII23_20890) pilR 4445340..4446677 (+) 1338 WP_165564028.1 sigma-54 dependent transcriptional regulator Regulator
  GII23_RS20960 (GII23_20895) - 4446722..4447774 (-) 1053 WP_041107889.1 DUF2333 family protein -
  GII23_RS20965 (GII23_20900) - 4447967..4449562 (+) 1596 WP_165564029.1 PleD family two-component system response regulator -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58445.34 Da        Isoelectric Point: 7.2784

>NTDB_id=398726 GII23_RS20950 WP_205884937.1 4443640..4445232(+) (pilS) [Stutzerimonas balearica strain EC28]
MDTDTLAIAAGQSQRILRLYHLYRLAIGLALVLLISSDLHNDLLQMSNPQLFSYGAWIYLIVNIVVAVLLQNPTQTVQVL
ALALVDVMLLAALFYFAGGTPSGIGNLLIIAVAISNILVRGKVGFLIAAVAATGLIYLTFYLSLSHPAANSQFVQAGALG
TLCFAAAFLVQGLTRRLQASEDLARQRAADVANLEALNTLILQRMRTGILVLDPRQRVLLANQGALQMLEQDSLTGTKLA
EHCPDLIARLGQWQNNPTLRAQGLQISSGGPMLQPSFASLQHGERCNTLVFLEDISQIAQQAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEQLDGQDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRSGLSPR
QCLHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGQVHDTAQVWLRLYRDESSDLPMAEVLDDGPGVAPEQLSNIFEP
FYTTESKGTGLGLYISRELCESNQARLDYQPRPEGGSCFRIVFAHPRKLG

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=398726 GII23_RS20950 WP_205884937.1 4443640..4445232(+) (pilS) [Stutzerimonas balearica strain EC28]
GTGGACACTGACACCCTGGCCATCGCCGCTGGCCAGAGCCAGCGCATCCTGCGTCTCTACCACCTCTACCGCCTCGCCAT
CGGGCTGGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGACCTGCTGCAGATGAGCAACCCGCAGCTGTTCAGCT
ACGGTGCCTGGATCTACCTGATCGTCAACATCGTTGTCGCGGTACTGCTGCAGAACCCCACACAGACGGTACAGGTCCTG
GCGCTGGCCCTGGTCGACGTGATGCTACTGGCCGCCCTGTTCTATTTTGCTGGCGGCACACCCAGCGGGATCGGCAACCT
GCTGATCATCGCGGTGGCCATCTCGAACATCCTGGTACGCGGCAAGGTCGGCTTTCTGATCGCCGCGGTCGCGGCTACCG
GCCTGATCTACCTGACCTTTTACCTGAGCCTCAGCCACCCGGCCGCCAACAGCCAGTTCGTCCAGGCGGGCGCACTGGGC
ACGCTGTGCTTCGCCGCCGCTTTTCTGGTCCAGGGCCTGACGCGTCGCCTGCAAGCCAGTGAAGACCTGGCCCGTCAGCG
CGCGGCGGACGTCGCGAACCTCGAGGCGCTGAACACGCTCATCCTGCAACGCATGCGCACCGGCATTCTCGTGCTCGACC
CGCGGCAGCGCGTACTGCTGGCCAATCAGGGTGCACTGCAGATGCTCGAACAGGACAGCCTCACCGGCACGAAGCTGGCC
GAGCATTGCCCAGACCTGATCGCGCGCCTGGGCCAATGGCAGAACAACCCGACCTTGCGCGCCCAGGGACTGCAGATTTC
CAGCGGCGGGCCGATGCTGCAGCCAAGCTTTGCCTCGCTGCAGCATGGCGAGCGATGCAATACGCTGGTGTTTCTCGAAG
ACATCTCGCAGATCGCCCAGCAGGCCCAGCAGCTCAAGCTGGCTTCGCTCGGCCGGCTGACCGCCAGCATCGCCCATGAG
ATCCGCAACCCGCTTGGTGCGATCAGCCATGCCGCCCAGCTGCTGCAGGAATCCGAGCAGCTCGACGGCCAGGATCGCCG
GCTGGCACAGATCATCCAGGATCATTCGAGACGCATGAATCTGGTGATCGAAAACGTCCTGCAGCTGTCGCGCCGACGGC
AGGCGGAACCGCAGCTGCTGGACCTGAAGTACTGGCTGCATCGCTTTGTCAGCGAGTTCCGCAGCGGCCTTTCGCCGCGC
CAGTGCCTGCATCTGGAAACCATCGGCAGCTCGCTGCAGACCCGCATGGACCCCAATCAGCTGACGCAGGTGCTGACCAA
CCTGGTGCAGAACGGCCTGCGCTATAGCGGGCAGGTGCACGACACAGCCCAGGTATGGCTGCGCCTGTACCGCGACGAGT
CCAGCGACCTGCCGATGGCCGAAGTGCTCGACGATGGTCCCGGCGTTGCACCGGAACAGCTGAGCAACATCTTCGAGCCC
TTCTATACCACCGAGAGCAAAGGCACCGGGCTGGGCTTGTACATTTCGCGGGAGCTGTGCGAGAGCAACCAGGCGCGCCT
GGACTATCAGCCCCGTCCGGAAGGTGGCAGCTGCTTCCGCATTGTCTTCGCCCATCCGCGCAAGCTGGGCTGA

Domains

Predicted by InterproScan.

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

64.083

99.811

0.64

Multiple sequence alignment