Detailed information    

insolico Bioinformatically predicted

Overview

Name   scnR   Type   Regulator
Locus tag   GDS87_RS08215 Genome accession   NZ_CP045835
Coordinates   1747055..1747768 (-) Length   237 a.a.
NCBI ID   WP_369595211.1    Uniprot ID   -
Organism   Lysinibacillus pakistanensis strain LZH-9     
Function   regulate comX expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 1742055..1752768
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GDS87_RS08200 (GDS87_08090) - 1743321..1744841 (+) 1521 WP_369595208.1 succinate CoA transferase -
  GDS87_RS08205 (GDS87_08095) - 1744933..1745442 (+) 510 WP_369595209.1 YfiT family bacillithiol transferase -
  GDS87_RS08210 (GDS87_08100) - 1745651..1747054 (-) 1404 WP_369595210.1 ATP-binding protein -
  GDS87_RS08215 (GDS87_08105) scnR 1747055..1747768 (-) 714 WP_369595211.1 response regulator transcription factor Regulator
  GDS87_RS08220 (GDS87_08110) - 1747870..1748220 (-) 351 WP_283871642.1 YxeA family protein -
  GDS87_RS08225 (GDS87_08115) - 1748240..1748971 (-) 732 WP_054770352.1 ABC transporter permease -
  GDS87_RS08230 (GDS87_08120) - 1748984..1749736 (-) 753 WP_369595212.1 ABC transporter permease -
  GDS87_RS08235 (GDS87_08125) - 1749733..1750650 (-) 918 WP_369595842.1 ABC transporter ATP-binding protein -
  GDS87_RS08240 (GDS87_08130) - 1751099..1751542 (+) 444 WP_369595213.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 237 a.a.        Molecular weight: 26972.32 Da        Isoelectric Point: 4.8270

>NTDB_id=398533 GDS87_RS08215 WP_369595211.1 1747055..1747768(-) (scnR) [Lysinibacillus pakistanensis strain LZH-9]
MENLKEKKILIVDDELEMIIMIEKFLRKEGFFRIYTAADFASALSICRTVKPDIAILDVMLPDGDGFSLLTSIRQFSEIP
VLFLSARGEDEDRLLGLGLGADDYIVKPFLPRELVLRLTAILKRVYSSPVTEDSVVFRLEDLIIDLDSAVVQRNQEEIPL
TAKEHAILQKLYNNNGKIVTSDALCQAVWGDDSYGYENTLMVHMRRIREKIEQDPSKPTHLLTVRGLGYKLLLKETN

Nucleotide


Download         Length: 714 bp        

>NTDB_id=398533 GDS87_RS08215 WP_369595211.1 1747055..1747768(-) (scnR) [Lysinibacillus pakistanensis strain LZH-9]
TTGGAGAATTTAAAAGAAAAAAAGATATTAATTGTAGATGATGAATTGGAAATGATAATAATGATTGAGAAATTTTTACG
AAAAGAGGGCTTTTTTCGTATATATACTGCTGCCGATTTTGCCTCAGCTTTGTCGATTTGCCGAACAGTTAAGCCTGATA
TTGCGATTCTCGATGTTATGCTACCTGATGGTGATGGATTCTCACTTCTAACCTCTATTAGGCAGTTCTCTGAGATACCA
GTGCTTTTTCTTTCTGCACGAGGTGAGGATGAAGATCGATTACTAGGACTGGGTTTAGGGGCAGATGATTATATTGTAAA
GCCCTTCCTGCCCCGTGAATTGGTTTTGCGACTGACAGCAATTCTAAAAAGAGTCTATTCCTCCCCAGTAACAGAAGATT
CAGTTGTCTTTCGATTGGAGGATCTAATCATTGATTTAGATAGCGCTGTTGTACAAAGAAATCAAGAAGAAATACCTTTG
ACAGCAAAGGAACATGCAATCCTTCAAAAGTTGTACAATAATAACGGGAAAATTGTCACTAGTGATGCCTTATGCCAGGC
TGTCTGGGGAGACGACAGCTACGGTTACGAAAATACATTAATGGTTCATATGAGACGGATTCGTGAAAAAATTGAGCAAG
ATCCCTCTAAACCAACCCATCTTCTCACAGTTAGGGGCTTAGGATATAAATTACTACTGAAGGAGACAAATTAG

Domains

Predicted by InterproScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(155-231)

Response regulator receiver domain (Response_reg)

(9-118)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  scnR Streptococcus mutans UA159

50.655

96.624

0.489
  vicR Streptococcus mutans UA159

41.558

97.468

0.405
  micA Streptococcus pneumoniae Cp1015

41.304

97.046

0.401

Multiple sequence alignment