Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII76_RS16740 Genome accession   NZ_CP045826
Coordinates   3199371..3200015 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain 73     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3194371..3205015
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII76_RS16705 (GII76_16705) mrpB 3195563..3195994 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GII76_RS16710 (GII76_16710) mrpC 3195994..3196335 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII76_RS16715 (GII76_16715) mrpD 3196328..3197809 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  GII76_RS16720 (GII76_16720) mrpE 3197815..3198291 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII76_RS16725 (GII76_16725) mrpF 3198291..3198575 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII76_RS16730 (GII76_16730) mnhG 3198559..3198933 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  GII76_RS16735 (GII76_16735) yuxO 3198972..3199352 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  GII76_RS16740 (GII76_16740) comA 3199371..3200015 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII76_RS16745 (GII76_16745) comP 3200096..3202405 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  GII76_RS16750 (GII76_16750) comX 3202420..3202587 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  GII76_RS16755 (GII76_16755) comQ 3202575..3203474 (-) 900 WP_015251332.1 ComX modifying isoprenyl transferase ComQ Regulator
  GII76_RS16760 (GII76_16760) degQ 3203659..3203799 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII76_RS16765 (GII76_16765) - 3204021..3204146 (+) 126 WP_003228793.1 hypothetical protein -
  GII76_RS16770 (GII76_16770) - 3204260..3204628 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=398406 GII76_RS16740 WP_003220716.1 3199371..3200015(-) (comA) [Bacillus subtilis strain 73]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=398406 GII76_RS16740 WP_003220716.1 3199371..3200015(-) (comA) [Bacillus subtilis strain 73]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAAGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTTAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment