Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   HR073_RS12780 Genome accession   NZ_CP054227
Coordinates   2685160..2686587 (+) Length   475 a.a.
NCBI ID   WP_001544682.1    Uniprot ID   -
Organism   Escherichia coli strain EcPF15     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2680160..2691587
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HR073_RS12750 (HR073_12740) cobU 2680432..2680977 (-) 546 WP_024192944.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  HR073_RS12755 (HR073_12745) - 2681201..2681335 (+) 135 WP_001300152.1 EutP/PduV family microcompartment system protein -
  HR073_RS12760 (HR073_12750) tmaR 2681436..2681765 (-) 330 WP_000450409.1 DUF496 family protein -
  HR073_RS12765 (HR073_12755) yeeA 2681937..2682995 (-) 1059 WP_001200891.1 FUSC family protein -
  HR073_RS12770 (HR073_12760) sbmC 2683193..2683666 (-) 474 WP_001105410.1 DNA gyrase inhibitor SbmC -
  HR073_RS12775 (HR073_12765) dacD 2683785..2684951 (-) 1167 WP_000830169.1 serine-type D-Ala-D-Ala carboxypeptidase DacD -
  HR073_RS12780 (HR073_12770) sbcB 2685160..2686587 (+) 1428 WP_001544682.1 exodeoxyribonuclease I Machinery gene
  HR073_RS12785 (HR073_12775) plaP 2686661..2688019 (-) 1359 WP_000019197.1 putrescine/proton symporter PlaP -
  HR073_RS12790 (HR073_12780) yoeI 2688009..2688071 (-) 63 WP_010723108.1 membrane protein YoeI -
  HR073_RS12795 (HR073_12785) yeeY 2688286..2689215 (-) 930 WP_024192945.1 LysR substrate-binding domain-containing protein -
  HR073_RS12800 (HR073_12790) yeeZ 2689261..2690085 (-) 825 WP_000754758.1 SDR family oxidoreductase -
  HR073_RS12805 (HR073_12795) yoeB 2690168..2690422 (-) 255 WP_000767829.1 type II toxin-antitoxin system mRNA interferase toxin YoeB -
  HR073_RS12810 (HR073_12800) yefM 2690419..2690670 (-) 252 WP_001259255.1 YoeB-YefM toxin-antitoxin system antitoxin YefM -
  HR073_RS12815 (HR073_12805) hisL 2690953..2691003 (+) 51 WP_001364200.1 his operon leader peptide -

Sequence

Protein


Download         Length: 475 a.a.        Molecular weight: 54472.76 Da        Isoelectric Point: 5.4700

>NTDB_id=398329 HR073_RS12780 WP_001544682.1 2685160..2686587(+) (sbcB) [Escherichia coli strain EcPF15]
MMNDGKQQSTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGEN
EAAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDG
LPSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMKPLVHVSGMFGAWR
GNTSWVAPLAWHPENRNAVIMVDLAGDISPLLELDSDTLRERLYTAKTDLGDNAAVPVKLVHINKCPVLAQANTLRPEDA
DRLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVD
KRIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALLKALWQYAEEIL

Nucleotide


Download         Length: 1428 bp        

>NTDB_id=398329 HR073_RS12780 WP_001544682.1 2685160..2686587(+) (sbcB) [Escherichia coli strain EcPF15]
ATGATGAATGACGGTAAGCAACAATCTACCTTTTTGTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCG
CCCTGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCG
CTGATGACTATTTACCCCAGCCAGGAGCCGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAAC
GAAGCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTT
CGACGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGC
GCTGGGATTTGTTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGT
CTACCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGT
GTACGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATA
AACACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAAACCCCTGGTTCACGTTTCCGGAATGTTTGGGGCATGGCGC
GGCAATACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCTGTAATTATGGTGGATTTGGCAGGAGA
CATTTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACCGCAAAAACCGATCTTGGCGATAACG
CCGCCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCC
GACCGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGT
GGTGGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTG
ACGCCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGAT
AAACGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTG
GCTGGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAAT
ATGCCGATGACAAAGAGAAAGTGGCGCTGTTAAAAGCGCTTTGGCAGTACGCGGAAGAGATCCTCTGA

Domains

Predicted by InterProScan.

Exonuclease (RNase_T)

(13-188)

Exonuclease C-terminal (ExoI_SH3)

(212-472)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

98.947

0.583

Multiple sequence alignment