Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII77_RS16540 Genome accession   NZ_CP045825
Coordinates   3181618..3182262 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain 75     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3176618..3187262
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII77_RS16505 (GII77_16505) mrpB 3177808..3178239 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GII77_RS16510 (GII77_16510) mrpC 3178239..3178580 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII77_RS16515 (GII77_16515) mrpD 3178573..3180054 (+) 1482 WP_044052469.1 Na+/H+ antiporter subunit D -
  GII77_RS16520 (GII77_16520) mrpE 3180060..3180536 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII77_RS16525 (GII77_16525) mrpF 3180536..3180820 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII77_RS16530 (GII77_16530) mnhG 3180804..3181178 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  GII77_RS16535 (GII77_16535) yuxO 3181219..3181599 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  GII77_RS16540 (GII77_16540) comA 3181618..3182262 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII77_RS16545 (GII77_16545) comP 3182343..3184652 (-) 2310 WP_015251333.1 two-component system sensor histidine kinase ComP Regulator
  GII77_RS16550 (GII77_16550) comX 3184667..3184834 (-) 168 WP_003242801.1 competence pheromone ComX Regulator
  GII77_RS16555 (GII77_16555) comQ 3184822..3185721 (-) 900 WP_015251332.1 ComX modifying isoprenyl transferase ComQ Regulator
  GII77_RS16560 (GII77_16560) degQ 3185906..3186046 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII77_RS16565 (GII77_16565) - 3186268..3186393 (+) 126 WP_003228793.1 hypothetical protein -
  GII77_RS16570 (GII77_16570) - 3186507..3186875 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=398325 GII77_RS16540 WP_003220716.1 3181618..3182262(-) (comA) [Bacillus subtilis strain 75]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=398325 GII77_RS16540 WP_003220716.1 3181618..3182262(-) (comA) [Bacillus subtilis strain 75]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGTGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment