Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   GII78_RS17160 Genome accession   NZ_CP045824
Coordinates   3261342..3261986 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain MB8_B10     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3256342..3266986
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  GII78_RS17125 (GII78_17125) mrpB 3257534..3257965 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  GII78_RS17130 (GII78_17130) mrpC 3257965..3258306 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  GII78_RS17135 (GII78_17135) mrpD 3258299..3259780 (+) 1482 WP_015714622.1 Na+/H+ antiporter subunit D -
  GII78_RS17140 (GII78_17140) mrpE 3259786..3260262 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  GII78_RS17145 (GII78_17145) mrpF 3260262..3260546 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  GII78_RS17150 (GII78_17150) mnhG 3260530..3260904 (+) 375 WP_015714623.1 monovalent cation/H(+) antiporter subunit G -
  GII78_RS17155 (GII78_17155) yuxO 3260943..3261323 (-) 381 WP_015714624.1 hotdog fold thioesterase -
  GII78_RS17160 (GII78_17160) comA 3261342..3261986 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  GII78_RS17165 (GII78_17165) comP 3262067..3264379 (-) 2313 WP_069703660.1 histidine kinase Regulator
  GII78_RS17170 (GII78_17170) comX 3264395..3264616 (-) 222 WP_014480704.1 competence pheromone ComX -
  GII78_RS17175 (GII78_17175) - 3264618..3265481 (-) 864 WP_043858576.1 polyprenyl synthetase family protein -
  GII78_RS17180 (GII78_17180) degQ 3265666..3265806 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  GII78_RS17185 (GII78_17185) - 3266028..3266153 (+) 126 WP_003228793.1 hypothetical protein -
  GII78_RS17190 (GII78_17190) - 3266267..3266635 (+) 369 WP_014477834.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=398246 GII78_RS17160 WP_003220716.1 3261342..3261986(-) (comA) [Bacillus subtilis strain MB8_B10]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=398246 GII78_RS17160 WP_003220716.1 3261342..3261986(-) (comA) [Bacillus subtilis strain MB8_B10]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTCTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment